PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013618727.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 665aa MW: 75444.5 Da PI: 6.6714

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013618727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1.1e-55	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+ XP_013618727.1 6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVT 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s ++++vg+kktLv+y+grap+g++tdWvmheyrle XP_013618727.1 100 S-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.025	6	156	IPR003441	NAC domain
Pfam	PF02365	2.5E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK 60 DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEQHHGM KRKKATTNSE 180 QSTSSTCLYS DGMYENLENS GYPVSPDHGL TQLGNISSSD METIENKWSH FMSHDTSFNF 240 PAQSQFCSQY GTITYPPSKA EIAFECGRLK NRMLPPAPPL HVEDLAHSEH LGTNVANDTD 300 QMLSKIIALA QASHEPHNSL GSWEFASASG NFQGDVCYPG EKASGSWVEA NMKAVDMQAH 360 DGRFKEERIV ENLRWVGVSN KELEKSFIEE HSTVVPIEDI WSYRKDSHEH QDGEGVNNNG 420 DVDDVYTLEF SENELNANNS DKINNNDHDA TSSPRFEMVN KVEVSHGLSV TTRQVTNTCF 480 QQIVPSQTVI VYINPTGTVN CEHEKKLTEE VHVVKQINPR IDSFVSKILG PWRRFAYXIG 540 FVHILLLIYC ANQGGNSNEN QRSEGDCNDR GKILITKCCS EKNIWKKKKE KNIVDEKVFS 600 VQDSFMLKKL GLSVAXLAVS TICLIFNVKF NMDLHFFYCT TDYMCLGGLS SPLLSFLLFH 660 FSTPV

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEQHHGM KRKKATTNSE  180
QSTSSTCLYS DGMYENLENS GYPVSPDHGL TQLGNISSSD METIENKWSH FMSHDTSFNF  240
PAQSQFCSQY GTITYPPSKA EIAFECGRLK NRMLPPAPPL HVEDLAHSEH LGTNVANDTD  300
QMLSKIIALA QASHEPHNSL GSWEFASASG NFQGDVCYPG EKASGSWVEA NMKAVDMQAH  360
DGRFKEERIV ENLRWVGVSN KELEKSFIEE HSTVVPIEDI WSYRKDSHEH QDGEGVNNNG  420
DVDDVYTLEF SENELNANNS DKINNNDHDA TSSPRFEMVN KVEVSHGLSV TTRQVTNTCF  480
QQIVPSQTVI VYINPTGTVN CEHEKKLTEE VHVVKQINPR IDSFVSKILG PWRRFAYXIG  540
FVHILLLIYC ANQGGNSNEN QRSEGDCNDR GKILITKCCS EKNIWKKKKE KNIVDEKVFS  600
VQDSFMLKKL GLSVAXLAVS TICLIFNVKF NMDLHFFYCT TDYMCLGGLS SPLLSFLLFH  660
FSTPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-56	1	162	15	174	NAC domain-containing protein 19
4dul_A	2e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013618727.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	4e-90	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F12P19	4e-90	AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618727.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBL	A0A0D3ANA6	0.0	A0A0D3ANA6_BRAOL; Uncharacterized protein
STRING	Bo2g052630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10112	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	0.0	NAC domain containing protein 28