PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618730.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 233aa    MW: 26148.3 Da    PI: 6.8201
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.2e-36251152101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed+++++++swse+g+sfvv+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll++
  XP_013618730.1  25 FLTKTFNLVEDPSIDDVVSWSEDGSSFVVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNEFFRRGEKRLLRD 110
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_013618730.1 111 IQRRK 115
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.08E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSPPSNNSYT TMATAESQRT VPTPFLTKTF NLVEDPSIDD VVSWSEDGSS FVVWNPTDFA  60
RDLLPKHFKH NNFSSFVRQL NTYGFKKVVP DRWEFSNEFF RRGEKRLLRD IQRRKLTPQA  120
AVSSPRPEVV AARTPKTVVS PSSSGEDQTM SPSSSTGNGG LSAELLEENE RLRSENIQLN  180
RDLAQMKSLY GNILAVMSNY AGASSSSHEM MMEIEEESSP RLFGVSIGLK REK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-252511429129Heat shock factor protein 1
5d5v_B2e-252511429129Heat shock factor protein 1
5d5v_D2e-252511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618730.11e-171PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-101HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0D3AYA01e-170A0A0D3AYA0_BRAOL; Uncharacterized protein
STRINGBo2g161830.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]