PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618779.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 505aa    MW: 56437.8 Da    PI: 6.7997
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.84.2e-27277330256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_013618779.1 277 KKVDWTQELHKKFVQAVDQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 330
                     689*****************.********************************96 PP
2Response_reg31.97e-123512815109
                     HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     r+ le+ +y +v++++dg+eal  + ++   +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp +pe+l
  XP_013618779.1  35 RSKLESMDY-IVTTFTDGTEALSAVMKSLesFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCITTTMKCIALGAVEFLQKPLSPEKL 126
                     5668999**.**************976655799999999988755..77888888889********9999************************9 PP

                     HH CS
    Response_reg 108 vk 109
                      +
  XP_013618779.1 127 KN 128
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.5E-1517141No hitNo description
SuperFamilySSF521728.68E-1417135IPR011006CheY-like superfamily
PROSITE profilePS5011022.00420134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-834128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.46E-938133No hitNo description
PROSITE profilePS5129417.586273332IPR017930Myb domain
SuperFamilySSF466892.51E-18274333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25275332IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24277330IPR006447Myb domain, plants
PfamPF002495.2E-7279327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVMK  60
SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPSTPQL  180
KQVSRLLDGG DRQENINSST EKENMEDQDI GESKSVDTTN HDNNVIVKEE KEDGGTGDMK  240
SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ  300
AIPSRILELM KVDGLTRHNV ASHLQKFRMH RRNILPKEDH NHRWIQSREN HRQIQRQYNG  360
FQQQHRPVMA YPVWGLPGVH PPGAVPPLWP PPLQSSGQLP PWHWRPPYPT VNRNAWGCPV  420
VQPVTGTFSS PPVTATFTTP PATQLDEEMV DQVVKEAISK PWLPLPLGLK PPSAESVLAE  480
LSRQGISAVP SSSSSCPING SRRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17278329758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618779.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0D3A3Z70.0A0A0D3A3Z7_BRAOL; Uncharacterized protein
STRINGBo1g019180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]