PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619040.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 171aa    MW: 19756.7 Da    PI: 6.6006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.0001666861130
                    HHHHHHHHHHHHHHCTSCC.C CS
             HLH 11 rRRdriNsafeeLrellPk.a 30
                     RR+ri +++  L+el+P+ +
  XP_013619040.1 66 LRRERIAERIMALQELVPTvN 86
                    6*****************944 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKRGCYQGDR HGNCDVGDFH LEEDQSPQRH PLRRHDRGSS SFALLDMIED VVSLYIFLGP  60
ASPQQLRRER IAERIMALQE LVPTVNKVSI FHLLYGSARC WIQILWRLVS CFCKWSQDTH  120
VTSKKTVACD TNEQQSDPIS VPCLFFFYHF LSLELCCQNE TLCLIISVCE T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619040.11e-126PREDICTED: uncharacterized protein LOC106325541 isoform X1
TrEMBLA0A0D3AIY99e-74A0A0D3AIY9_BRAOL; Uncharacterized protein
STRINGBo2g011720.12e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2651822