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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_013619042.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | bHLH | ||||||||
| Protein Properties | Length: 113aa MW: 13032.9 Da PI: 8.1077 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 13.8 | 0.00011 | 66 | 86 | 11 | 30 |
HHHHHHHHHHHHHHCTSCC.C CS
HLH 11 rRRdriNsafeeLrellPk.a 30
RR+ri +++ L+el+P+ +
XP_013619042.1 66 LRRERIAERIMALQELVPTvN 86
6*****************944 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 8.4E-4 | 65 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 113 aa Download sequence Send to blast |
MKRGCYQGDR HGNCDVGDFH LEEDQSPQRH PLRRHDRGSS SFALLDMIED VVSLYIFLGP 60 ASPQQLRRER IAERIMALQE LVPTVNKVSI FHLLYGSARC WIQILWSGAK THM |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_013619042.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013619042.1 | 1e-80 | PREDICTED: uncharacterized protein LOC106325541 isoform X3 | ||||
| TrEMBL | A0A0D3AIY9 | 1e-73 | A0A0D3AIY9_BRAOL; Uncharacterized protein | ||||
| STRING | Bo2g011720.1 | 2e-74 | (Brassica oleracea) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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