PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619182.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 247aa    MW: 26714.5 Da    PI: 8.1217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-304106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+
  XP_013619182.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGILWSGNWHLCQA 98 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e+++++
  XP_013619182.1  99 AVEAVMRG 106
                     **998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9453109IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-254104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGILWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG  120
QAPPFNNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSHESAVVKG  180
EGSMVSSEET TEEPSWIGLE LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE  240
LGLVCSE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-135AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-135AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-135BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-135BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619182.10.0PREDICTED: LOB domain-containing protein 40
RefseqXP_013676373.20.0LOB domain-containing protein 40-like
SwissprotQ9ZW961e-126LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A078HWZ50.0A0A078HWZ5_BRANA; BnaC02g17190D protein
TrEMBLA0A0D3ANI60.0A0A0D3ANI6_BRAOL; Uncharacterized protein
STRINGBo2g055410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-127LOB domain-containing protein 40