PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619184.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 349aa    MW: 39152.1 Da    PI: 9.9858
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-1365113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      +kr++lg+f  +eeAa+ ++ a+ +++g
  XP_013619184.1  65 SKFKGVVPQP-NGRWGAQIYEK-----HKRVWLGTFNEEEEAARVYDVAAHRFRG 113
                     79****9888.8*********3.....5************************998 PP
2B399.71.7e-31195296196
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsdv+k++rlv+pk+ ae+h      g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++
  XP_013619184.1 195 FEKTVTPSDVGKLNRLVIPKHQAEKHfplpltGDVSVRGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQD 289
                     99******************************99999****************************************************887677 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     ++l++ +
  XP_013619184.1 290 QQLYIVW 296
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-865113IPR001471AP2/ERF domain
CDDcd000183.62E-2665123No hitNo description
SuperFamilySSF541712.94E-1765122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-2066121IPR001471AP2/ERF domain
SMARTSM003805.8E-2866127IPR001471AP2/ERF domain
PROSITE profilePS5103219.7766121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.4E-38188299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30193300IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-28194287No hitNo description
PfamPF023621.2E-27195298IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874195299IPR003340B3 DNA binding domain
SMARTSM010192.6E-25195300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEAVSSVDES STSTVSIHTP AKITPPPKTA KSSSPASLYR MGSGSSVVLD SQNGVEAESR  60
KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGSDAVTNF  120
KPDTTFRNGE GDGDEVKFLN AHSKYEIVDM LRKHTYKEEL EQRKRKRNGG NGDTEETAFA  180
NVTVVTGFKT AECLFEKTVT PSDVGKLNRL VIPKHQAEKH FPLPLTGDVS VRGTLLNFED  240
VNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKRLCAGDLI SFKRSNGQDQ QLYIVWKSKA  300
GLEQDTGRVV VRLFGVDIAS VKSRNDVVMK EETEMSLSSN KKQRLVTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-6419130610124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619184.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like
RefseqXP_013675138.10.0AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS061e-175RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A0D3AVW70.0A0A0D3AVW7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DQU20.0A0A3P6DQU2_BRAOL; Uncharacterized protein
STRINGBo2g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-168ethylene response DNA binding factor 3