PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619271.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 258aa    MW: 29398 Da    PI: 5.3666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.91.6e-21100160259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK++k s + r YYrC++a   +C+++k+v++ ++ p+v  +tY g+H +e
  XP_013619271.1 100 NDGFSWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQNSPSVYRTTYVGKHICE 160
                     8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.94694162IPR003657WRKY domain
SuperFamilySSF1182905.49E-2296161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-2397160IPR003657WRKY domain
SMARTSM007748.9E-3199161IPR003657WRKY domain
PfamPF031061.7E-22100159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSHGIDKAVE ALLRGQESAY RLKTVLEHAS SVPTEPLFDT VLDSFSFALS LFASSNPQPH  60
RESSQNKATP VVAQKSPKKN SHGEECLEQY IQDSPTPFCN DGFSWRKYGQ KKIKTSSHQR  120
CYYRCAYAKD RNCNATKRVQ QIQNSPSVYR TTYVGKHICE VNAFLQPNED IINGSKMIRF  180
DKIDQVMPDS VMPQLVPVEQ QEAIIIEGTD QIMNLECGSN EFLVDDEQLW GYQFPPCSPG  240
NFMFLDDLSE FDYNPFRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-14100160969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300720.0KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619271.10.0PREDICTED: probable WRKY transcription factor 64
SwissprotQ9C5575e-81WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLA0A0D3ARV50.0A0A0D3ARV5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CYR80.0A0A3P6CYR8_BRAOL; Uncharacterized protein
STRINGBo2g095820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.17e-78WRKY DNA-binding protein 64