PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619312.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 198aa MW: 22395.7 Da PI: 7.5374

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.8	9.5e-28	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s+gC+vkk+ver+ e+ +v++tYeg Hnhe XP_013619312.1 108 MDDGYKWRKYGKKSVKNNTNKRNYYKCSSEGCMVKKRVERDGENAAYVITTYEGVHNHE 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-30	95	168	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.656	103	168	IPR003657	WRKY domain
SMART	SM00774	1.5E-31	108	167	IPR003657	WRKY domain
Pfam	PF03106	4.0E-22	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MNPSQSPSPN FTFLSDENSI YSFMDNYDFS NLMFSVGEGG NNGLIQEETS SPTTFVTGES 60 GGSGSALTTL RKKESTSLDC KNRGSKDGET KEMGHRVAIR TRTKIDVMDD GYKWRKYGKK 120 SVKNNTNKRN YYKCSSEGCM VKKRVERDGE NAAYVITTYE GVHNHESPSH VYYSDMVYDH 180 DNWKQHSLLQ SIQTFPPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-24	96	168	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619312.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430060	0.0	KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619312.1	1e-148	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	4e-99	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	V5RF86	1e-143	V5RF86_BRACM; WRKY transcription factor 51
STRING	Bra031900.1-P	1e-141	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-101	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]