PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619386.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 233aa MW: 25990.9 Da PI: 8.6646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	129	176	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a++Le+ ++Y++sLq XP_013619386.1 129 SHSLAERVRRGKINERLKCLKDIVPGC----YKAMGMATMLEEIINYVQSLQ 176 8***********************8....355999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.16E-10	123	180	No hit	No description
SuperFamily	SSF47459	1.7E-16	123	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.44	125	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	125	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	129	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MFASPFSSSL DSLFFHYQQH QQFPEHFPGK SPENNGFHQG ILLPNYNTHN NDDSSSGIDT 60 KKRKTLMESV STSENSVSDQ TLSTSSAQVS TNGTKNSALR RGKRSKNREE EKERVVVHVS 120 AKRGQATDSH SLAERVRRGK INERLKCLKD IVPGCYKAMG MATMLEEIIN YVQSLQNQVE 180 VLSMKLTAAS LYYDFNSEAD AVDSMQKAKA REAVEMGQGR DGSSVFHSSS WTL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619386.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488585	1e-174	AF488585.1 Arabidopsis thaliana clone bHLH050 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AK118781	1e-174	AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
GenBank	BT006055	1e-174	BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619386.1	1e-175	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	1e-127	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A0D3AQE2	1e-174	A0A0D3AQE2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D7E4	1e-174	A0A3P6D7E4_BRAOL; Uncharacterized protein
STRING	Bo2g080780.1	1e-175	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-114	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]