PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619421.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 169aa MW: 18984 Da PI: 7.0566

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.4e-31	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ Cpvkk+ver+++dp++v++tYeg+Hnh+ XP_013619421.1 108 LDDGFKWRKYGKKMVKNSPHPRNYYKCAADACPVKKRVERDKDDPSFVITTYEGSHNHS 166 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-33	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-28	101	166	IPR003657	WRKY domain
PROSITE profile	PS50811	29.046	103	168	IPR003657	WRKY domain
SMART	SM00774	5.5E-36	108	167	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	109	165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MNDEETNLAR SFSDDTHSGL GLPDLYLTDE WMDDDLVSAV SGMNHSYGYQ TNVDAVFFSG 60 SSSSFIQPTS PSTKASVASA SAETQVKKEK KKVKERVAFK TRSDVEVLDD GFKWRKYGKK 120 MVKNSPHPRN YYKCAADACP VKKRVERDKD DPSFVITTYE GSHNHSSMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	98	165	7	74	Probable WRKY transcription factor 4
2lex_A	1e-25	98	165	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619421.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ012170	0.0	FJ012170.1 Brassica napus WRKY50 transcription factor (WRKY50) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619421.1	1e-124	PREDICTED: probable WRKY transcription factor 50
Refseq	XP_013675292.1	1e-124	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	3e-87	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A0D3AXG0	1e-123	A0A0D3AXG0_BRAOL; Uncharacterized protein
TrEMBL	C4N1L7	1e-123	C4N1L7_BRANA; BnaC02g40180D protein
STRING	Bo2g155960.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	7e-83	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]