PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619546.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 171aa MW: 19891.1 Da PI: 6.6828

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.1	6.1e-16	79	137	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v + eN++L ++l++l++ +k+ +e+ XP_013619546.1 79 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWFRVENHQLLDKLNNLSESHEKVLQEN 137 689***************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-14	75	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	77	140	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-11	77	133	No hit	No description
SuperFamily	SSF57959	6.26E-13	79	129	No hit	No description
Pfam	PF00170	4.3E-14	79	137	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.34E-18	80	130	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MQPQADVFSL HNYINSSNPS PYPSHFAVSP PYPINGQNLN PFYGIQSATN NPQSMSLSSN 60 STSDEAEEQQ TDKNIINERK QRRMISNRES ARRSRMRKQR HLDELWSQVM WFRVENHQLL 120 DKLNNLSESH EKVLQENVQL KGETSELKQV ISDMKIQSPF SCFRDDIIPI E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619546.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016878	1e-161	AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15.
GenBank	CP002686	1e-161	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619546.1	1e-124	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	1e-63	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A078HBJ0	1e-123	A0A078HBJ0_BRANA; BnaC02g38190D protein
TrEMBL	A0A0D3AWQ9	1e-123	A0A0D3AWQ9_BRAOL; Uncharacterized protein
STRING	Bo2g149490.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-92	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]