PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619717.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 201aa    MW: 23303.6 Da    PI: 9.392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.5e-1284144363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     + +  +rk +NRe+ArrsR +K+++++ L+    +L +eN++L ++l     +++   +e+
  XP_013619717.1  84 DEREKKRKKSNRESARRSRMKKQKYLDDLRSQLNQLNTENRELGNKLRYVMHHCQGANMEN 144
                     4455678899*************************************99999999777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.3E-1081135No hitNo description
SMARTSM003384.0E-1382146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.46184130IPR004827Basic-leucine zipper domain
PfamPF001708.8E-984143IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-1086137No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
CDDcd147022.37E-1593138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSSILPGFLS QRIVANHLQT LETRFTPWDD ASDIFSIFNS PVCPVEVNPA VEKTNSCHKS  60
DPCPDMEDRP SNLTGLNVFF PKKDEREKKR KKSNRESARR SRMKKQKYLD DLRSQLNQLN  120
TENRELGNKL RYVMHHCQGA NMENERLRVE NQILHEKLMS LRQALVLRQI QQSSTCATWS  180
CVNSTVVTVH QNPSMLRDHV I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619717.11e-150PREDICTED: regulatory protein opaque-2-like
TrEMBLA0A0D3AYY81e-148A0A0D3AYY8_BRAOL; Uncharacterized protein
STRINGBo2g168170.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.11e-26basic leucine-zipper 5