PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619739.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26776.9 Da    PI: 8.9802
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.64e-291969151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++gklyey+s
  XP_013619739.1 19 KRIDNPTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYEYAS 69
                    79***********************************************86 PP
2K-box51.83.5e-1893186999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkkle 99 
                     ++e++ + l+ e++ + + ie Lqr  R+l+GedL+++s++eL+++  q+eksl+ +Rs+K +l  +++ +l+     ++el +e ++L++++e
  XP_013619739.1  93 QKEQQVQDLKDEITIMVNSIELLQRHCRRLMGEDLDTCSVEELKEITIQIEKSLTIVRSRKAKLNEDEVGKLKAEiagKRELLNERTRLHEMFE 186
                     78999******************************************************************99763335777788888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-401170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.8381171IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-311382IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-291333IPR002100Transcription factor, MADS-box
CDDcd002651.78E-381378No hitNo description
PfamPF003191.6E-252067IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-293348IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-294869IPR002100Transcription factor, MADS-box
PfamPF014865.9E-1894185IPR002487Transcription factor, K-box
PROSITE profilePS5129711.32398191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSPTNHGRK MVKGKIEIKR IDNPTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ  60
KGKLYEYASS DMKKMMERCE LHRREYFHEE RLQKEQQVQD LKDEITIMVN SIELLQRHCR  120
RLMGEDLDTC SVEELKEITI QIEKSLTIVR SRKAKLNEDE VGKLKAEIAG KRELLNERTR  180
LHEMFEEKTL WMQSRNLESE KNASSSACEN MHISNVETDL FIGLPRSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A7e-19876165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B7e-19876165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C7e-19876165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D7e-19876165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A9e-19876165Myocyte-specific enhancer factor 2A
3kov_B9e-19876165Myocyte-specific enhancer factor 2A
3kov_I9e-19876165Myocyte-specific enhancer factor 2A
3kov_J9e-19876165Myocyte-specific enhancer factor 2A
3mu6_A7e-19876165Myocyte-specific enhancer factor 2A
3mu6_B7e-19876165Myocyte-specific enhancer factor 2A
3mu6_C7e-19876165Myocyte-specific enhancer factor 2A
3mu6_D7e-19876165Myocyte-specific enhancer factor 2A
3p57_A9e-19876165Myocyte-specific enhancer factor 2A
3p57_B9e-19876165Myocyte-specific enhancer factor 2A
3p57_C9e-19876165Myocyte-specific enhancer factor 2A
3p57_D9e-19876165Myocyte-specific enhancer factor 2A
3p57_I9e-19876165Myocyte-specific enhancer factor 2A
3p57_J9e-19876165Myocyte-specific enhancer factor 2A
6byy_C9e-191176166MEF2 CHIMERA
6byy_D9e-191176166MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325421e-102AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619739.11e-168PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1
SwissprotQ9LT932e-70AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A0D3AY731e-161A0A0D3AY73_BRAOL; Uncharacterized protein
STRINGBo2g161560.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-74MIKC_MADS family protein