PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619740.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25652.6 Da    PI: 8.7308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++gklyey+s
  XP_013619740.1  9 KRIDNPTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYEYAS 59
                    79***********************************************86 PP
2K-box523.1e-1883176999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkkle 99 
                     ++e++ + l+ e++ + + ie Lqr  R+l+GedL+++s++eL+++  q+eksl+ +Rs+K +l  +++ +l+     ++el +e ++L++++e
  XP_013619740.1  83 QKEQQVQDLKDEITIMVNSIELLQRHCRRLMGEDLDTCSVEELKEITIQIEKSLTIVRSRKAKLNEDEVGKLKAEiagKRELLNERTRLHEMFE 176
                     78999******************************************************************99763335777788888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-40160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-29323IPR002100Transcription factor, MADS-box
CDDcd002652.27E-38368No hitNo description
SuperFamilySSF554557.59E-31372IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-1884175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.32388181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKGKIEIKR IDNPTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYEYASS  60
DMKKMMERCE LHRREYFHEE RLQKEQQVQD LKDEITIMVN SIELLQRHCR RLMGEDLDTC  120
SVEELKEITI QIEKSLTIVR SRKAKLNEDE VGKLKAEIAG KRELLNERTR LHEMFEEKTL  180
WMQSRNLESE KNASSSACEN MHISNVETDL FIGLPRSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-19166166MEF2C
5f28_B9e-19166166MEF2C
5f28_C9e-19166166MEF2C
5f28_D9e-19166166MEF2C
6byy_A8e-19166166MEF2 CHIMERA
6byy_B8e-19166166MEF2 CHIMERA
6byy_C8e-19166166MEF2 CHIMERA
6byy_D8e-19166166MEF2 CHIMERA
6bz1_A8e-19166166MEF2 CHIMERA
6bz1_B8e-19166166MEF2 CHIMERA
6bz1_C8e-19166166MEF2 CHIMERA
6bz1_D8e-19166166MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325425e-87AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619739.11e-159PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_013619740.11e-159PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
SwissprotQ9LT931e-70AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A0D3AY731e-152A0A0D3AY73_BRAOL; Uncharacterized protein
STRINGBo2g161560.11e-152(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.26e-75MIKC_MADS family protein