PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619786.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26417.9 Da PI: 9.1985

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	78	131	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+ ql Le+ F+ + +++ + + +L++ lgL+ rq+ vWFqNrRa++k XP_013619786.1 78 KKKRLTSGQLASLEQSFQGEIKLDSDGKLKLSRDLGLQPRQIAVWFQNRRARWK 131 45679************************************************9 PP
2	HD-ZIP_I/II	112.5	2.7e-36	78	168	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ e kL+++ K +l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+ XP_013619786.1 78 KKKRLTSGQLASLEQSFQGEIKLDSDGKLKLSRDLGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDLVSREKQMLHEEVKKLRAVLR 168 9**************************************************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.95E-16	64	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.807	73	133	IPR001356	Homeobox domain
SMART	SM00389	3.6E-15	75	137	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-15	78	131	IPR001356	Homeobox domain
CDD	cd00086	1.71E-12	78	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-18	80	140	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	108	131	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEWSMTSNVE NVRVAFMPQP WPESSSFNSL HSFNYDPYAA GNSYTHAVTQ TGPVISVPES 60 EKIINAYRYP SNKNEMTKKK RLTSGQLASL EQSFQGEIKL DSDGKLKLSR DLGLQPRQIA 120 VWFQNRRARW KAKQLEQLYD SLRQEYDLVS REKQMLHEEV KKLRAVLRDQ GLIKKQISGG 180 EDTTELPSVV IAQPRMENLH TNQLTGVNQI YGIDQCNNPM VVASSSWPPY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619786.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232522	1e-115	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619786.1	1e-173	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-137	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D3AHN8	1e-172	A0A0D3AHN8_BRAOL; Uncharacterized protein
STRING	Bo2g005230.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-139	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]