PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619851.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 343aa    MW: 38462.6 Da    PI: 4.8429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1583.8e-49221472128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s 
  XP_013619851.1  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS- 114
                     69************************999.99***************778888999**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++g+k+tLvf+ grapkge+t+W+mhey +
  XP_013619851.1 115 SSQVIGTKRTLVFHIGRAPKGERTEWLMHEYCM 147
                     999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5411163IPR003441NAC domain
PROSITE profilePS5100551.59121164IPR003441NAC domain
PfamPF023651.4E-2423146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEEAMGGFK DTAASVEAAT VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN  60
FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSSSQVIG  120
TKRTLVFHIG RAPKGERTEW LMHEYCMEGV SMDDALVVCR LRRNKEFHTS TSQKAPEPDL  180
PAEKHMIMQN GGGASSSSAH DWASMVDFYL AGESGEELLN EIAETSENLQ VHTEEDFFAD  240
ILKDEIINVD EAVTTGNIAN EVPTLESASK AIRVLPLPSM IDKQMASLLE ESPSQQKKGK  300
GSSGTDQLSS CFVGIYSIKT VNRVRWDVII CLVAFIVMFF CLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-412317422174NAC domain-containing protein 19
3swm_B1e-412317422174NAC domain-containing protein 19
3swm_C1e-412317422174NAC domain-containing protein 19
3swm_D1e-412317422174NAC domain-containing protein 19
3swp_A1e-412317422174NAC domain-containing protein 19
3swp_B1e-412317422174NAC domain-containing protein 19
3swp_C1e-412317422174NAC domain-containing protein 19
3swp_D1e-412317422174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747640.0KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619851.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A0D3AKF60.0A0A0D3AKF6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DME50.0A0A3P6DME5_BRAOL; Uncharacterized protein
STRINGBo2g023820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]