PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619899.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 252aa    MW: 28368 Da    PI: 9.9083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-21131180255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     g++GVr ++ +grW AeIrd    +  r r++lg+f+taeeAa+a++aa+ +l+g
  XP_013619899.1 131 GFRGVRKRP-WGRWSAEIRD----KiGRCRHWLGTFDTAEEAARAYDAAAMRLRG 180
                     79*******.**********....3335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.524131188IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21131188IPR016177DNA-binding domain
PfamPF008479.7E-15131180IPR001471AP2/ERF domain
SMARTSM003808.3E-32131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28132188IPR001471AP2/ERF domain
PRINTSPR003673.1E-10132143IPR001471AP2/ERF domain
CDDcd000183.02E-17132187No hitNo description
PRINTSPR003673.1E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENTVDGHRL QLPYPQSFGV ETHQSLEMYG LHKETPLVCM PLSGAKTPFS DLTVTEPFNG  60
PDTFDISSLF SPDPKPVPVS QRRVMDDSIA AIVGENVLFG NNNIKVSEHF TATETGDGVK  120
RWRKTPQKNG GFRGVRKRPW GRWSAEIRDK IGRCRHWLGT FDTAEEAARA YDAAAMRLRG  180
TKAKTNFVVH PVFPEEIAET QSSTTEEDRR RKKKKRVNVR KCVKVTSVEQ LFSDTTRNLT  240
SSSNDGNVIN PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17123187671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215RRKKKKR
2210215RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188489e-77AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188499e-77AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608449e-77AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260389e-77BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026849e-77CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464469e-77DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619899.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M56e-77ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0D3ARV60.0A0A0D3ARV6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DI820.0A0A3P6DI82_BRAOL; Uncharacterized protein
STRINGBo2g095830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-77ERF family protein