PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013620049.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 227aa MW: 25949 Da PI: 10.4882

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.2	4e-15	128	215	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++ ++k ++ +tl de+g+++e+ + k+ + l++GW +F+ +++L gD +vF+l++ + f +v XP_013620049.1 128 FVKSMLQSHVSGGFWLGLPVHFCRSE-LQK-QDGVITLIDEEGEEFEIVY--LAKRTG--LSGGWLGFAVSHNLVYGDALVFELVRPTVF--KVY 214 89*******************766.454.4458***********..555544..**********************987777..555 PP E CS B3 96 v 96 + XP_013620049.1 215 I 215 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-18	122	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-22	124	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.18E-22	126	217	No hit	No description
PROSITE profile	PS50863	12.21	128	219	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-13	128	215	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-20	128	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVVAKQSPYE EFRLRRLEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV 60 RRSSRISNAS SSSPVYKEVV VQRVHLPRRV SKGRDLSNRV YVSEEIREEA FSKAEKLQAD 120 LRNRFPSFVK SMLQSHVSGG FWLGLPVHFC RSELQKQDGV ITLIDEEGEE FEIVYLAKRT 180 GLSGGWLGFA VSHNLVYGDA LVFELVRPTV FKVYITRVKS SGESLKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620049.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620049.1	1e-165	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-99	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A0D3ATG3	1e-164	A0A0D3ATG3_BRAOL; Uncharacterized protein
STRING	Bo2g116250.1	1e-165	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-101	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]