PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620551.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 485aa    MW: 54433 Da    PI: 5.5657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-1122901597
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    +l+l  +f+++h+++      l + d s + Wevkl  ++++    l++GW+eF+  n+  +g ++vF+++g++ f  +v v 
  XP_013620551.1 22 ILTLDDEFISSHMKV------LLISDASDKIWEVKL--DGNR----LAGGWEEFAAVNNFSDGNVLVFRHNGEEIF--HVAVS 90
                    588999999999866......88899**********..9999....***********************9998888..77665 PP
2B374.81e-23131228199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ + +++++l+++rl l+k+f      ++++++++ l +e+gr+W+++l+ + +sg++++t+GW++F+ angL  gDf+ Fkl++ s++++v+ 
  XP_013620551.1 131 FLRARVTPYSLTKDRLDLSKDFKFMLFDEHKKQFEIHLVNEKGRKWTLRLSRNISSGAFYITRGWSNFCAANGLIRGDFCYFKLSE-SGERPVLL 224
                     6677899***************644455556889*****************9*******************************976.88889999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  XP_013620551.1 225 LCSH 228
                     9987 PP
3B352.77.7e-17267366299
                     EEE-..-HHHHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     ++   +++ +k+g+l   +l+   ++e g+kk  s ++tl d +gr+W  +l    + ++++++++kGW+e+++ang++++D++v++l+  ++++
  XP_013620551.1 267 LTRKFTPSRFKTGQLyisMLSSGVLRESGIKK--SGEITLLDNDGRKWPSYLHKtgQPGGEWCYIRKGWREMCEANGVEVNDSFVLELIC-EDAN 358
                     55666788888888844444555566767774..559***************7744555555**************************99.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     + +k+++k
  XP_013620551.1 359 PIFKFHSK 366
                     99998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-10790IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659893IPR003340B3 DNA binding domain
CDDcd100173.46E-61089No hitNo description
SMARTSM010198.5E-131193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-103190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17130227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.961131228IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-20131229IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-23131229IPR003340B3 DNA binding domain
PfamPF023625.2E-20131228IPR003340B3 DNA binding domain
CDDcd100173.42E-17141227No hitNo description
Gene3DG3DSA:2.40.330.105.5E-14261365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-14262363IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-13266367IPR003340B3 DNA binding domain
PfamPF023622.2E-18266366IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503266367IPR003340B3 DNA binding domain
CDDcd100176.22E-12295365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVVPPPQPSL FQLTFLTGDK PILTLDDEFI SSHMKVLLIS DASDKIWEVK LDGNRLAGGW  60
EEFAAVNNFS DGNVLVFRHN GEEIFHVAVS SESDDDESDD TDDSESDDSE DNDEGDSSLV  120
NKEVDSSSDC FLRARVTPYS LTKDRLDLSK DFKFMLFDEH KKQFEIHLVN EKGRKWTLRL  180
SRNISSGAFY ITRGWSNFCA ANGLIRGDFC YFKLSESGER PVLLLCSHES GNGHEDKEEE  240
ECPEADTLKI CSVGGCSNEK NTPSRFLTRK FTPSRFKTGQ LYISMLSSGV LRESGIKKSG  300
EITLLDNDGR KWPSYLHKTG QPGGEWCYIR KGWREMCEAN GVEVNDSFVL ELICEDANPI  360
FKFHSKIKNK GKGNIVTSKK RALHARTVER TPGVEIDGER GSKRGCTRVS NRSNTYLKGK  420
QPESCSVSDQ VANVRQSVLD TLNTIRHFKA ELKTRERNLE ASLLELDGLG EKILGISKIL  480
NNNLA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620551.10.0PREDICTED: B3 domain-containing protein REM1 isoform X2
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2U00.0A0A0D3A2U0_BRAOL; Uncharacterized protein
STRINGBo1g011150.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-122B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]