PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620588.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 477aa    MW: 54039.2 Da    PI: 4.6879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.8e-1033883494
                    SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    +++ l++  s r W+vkl  ++++    l++GW+eF+  +   egD++ F++dg++ f+  v
  XP_013620588.1 33 TKVLLRSdASDRIWKVKL--DGNR----LAGGWEEFAAVHSFSEGDVLAFRHDGEEIFRVAV 88
                    45666654899*******..9999....************************9988884444 PP
2B362.95.3e-20142236399
                     EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++++l  +rl ++ +f     +  k+++ ++ l +e+gr+W++ l+ + +sg++++++GW +F++angL +gD++ Fkl++ s++++v+ +
  XP_013620588.1 142 RASVTPSSLIDDRLDFSEDFKVMSfN--KQNKCEIYLVNEKGRKWTLILSRNISSGAFYIRRGWANFCSANGLSQGDICYFKLSE-SGERPVLLL 233
                     55677777778888888888433323..334459****************9*******************************976.888899999 PP

                     E-S CS
              B3  97 frk 99 
                     +++
  XP_013620588.1 234 CSH 236
                     987 PP
3B369.25.4e-22284377599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++ +k+g+l+++  f++e g++  +s+++tl +++gr+W+ +l++  ++++++++++kGW+e++kang++++D++v++l+  +++++v+k++
  XP_013620588.1 284 EFTPNRFKTGQLTISSVFLRESGIN--KSMEITLLNKDGRKWSSYLQMsgQRGREMFYMRKGWREMCKANGVEVNDSFVLELIC-EDATPVFKFH 375
                     568999****************999..799****************9966667777***************************9.8999999998 PP

                     -S CS
              B3  98 rk 99 
                     +k
  XP_013620588.1 376 SK 377
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.63192IPR003340B3 DNA binding domain
SMARTSM010191.1E-71492IPR003340B3 DNA binding domain
CDDcd100171.28E-62888No hitNo description
Gene3DG3DSA:2.40.330.102.4E-103190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-93290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-16140235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.27140236IPR003340B3 DNA binding domain
CDDcd100171.25E-16140235No hitNo description
SMARTSM010191.4E-19140237IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-17140235IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-17141236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-17276377IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.238280377IPR003340B3 DNA binding domain
SMARTSM010191.2E-20280378IPR003340B3 DNA binding domain
PfamPF023627.9E-22283377IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-16286380IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-14291376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVVPPKPSLF HWRFLTGVKP LLTLDDELLR NHTKVLLRSD ASDRIWKVKL DGNRLAGGWE  60
EFAAVHSFSE GDVLAFRHDG EEIFRVAVSG ESDDNESDDT DDSESDESDD VEDEDNDEGD  120
ILVEKNKKPE ADTSTGDSCF LRASVTPSSL IDDRLDFSED FKVMSFNKQN KCEIYLVNEK  180
GRKWTLILSR NISSGAFYIR RGWANFCSAN GLSQGDICYF KLSESGERPV LLLCSHESGN  240
GHEDKEEEEE EEEEEEFPEA DAVKICSVGC SKEKNTPSRL LTSEFTPNRF KTGQLTISSV  300
FLRESGINKS MEITLLNKDG RKWSSYLQMS GQRGREMFYM RKGWREMCKA NGVEVNDSFV  360
LELICEDATP VFKFHSKIEN KEKGDTVEKT PEVSKRGHAR VLNRSNSNLK RKQPESCSVS  420
DQVANVKQSI QDTLNTIRHF KAELKTRENN LEASLLEVDD LGERILGISK ILNNNLV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-150AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620588.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2T90.0A0A0D3A2T9_BRAOL; Uncharacterized protein
STRINGBo1g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-156B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]