PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620599.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 476aa    MW: 53772.7 Da    PI: 10.0139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1122971296
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     +++ ++p  f+++h +g++ e ++l+l++     +W+vkl  ++++    +++GW++F +a+ L+  D+++F+    +++e+ ++v
  XP_013620599.1 22 HNSNPIIPDAFFTTHlDGNN-ELTKLKLTSdACDTTWQVKL--NGRR----FADGWEDFSNAHCLRNDDVLLFR----EDGEMIFHV 97
                    344469*********85554.4568888875777*******..8887....99*********************....555555554 PP
2B359.94.6e-19168258698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     ++s++l+++r+ l k+f++++g+ k    ++ ++++sg+sW + l+++k+ g+ ++++GW++F++an+L++g f  F+++ + +++  ++k+++
  XP_013620599.1 168 VTSSNLRLNRVALAKSFTKANGLHKSW-CEINVMNQSGKSWVMGLRHNKGTGQDFMRGGWRSFCRANKLRTGSFYRFEFVLTrTRR--TLKLCS 258
                     689******************988754.59*****************99999999***********************87433555..666665 PP
3B355.51.1e-17280376199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f +v++++++lks++l + ++fa+e+g+kk +  ++ l d++g +W   +      g+++l+kGW +F+ka g+ +g+++++k++++++++++++
  XP_013620599.1 280 FMTVTLKAYMLKSRQLHFRNSFARENGIKKGG--KINLVDKNGGTWPSCVASGYVNGGFYLAKGWISFCKASGITTGETFTLKFVREKGKTPMLQ 372
                     7788999*******************999655..8***************77666667***************************99******** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_013620599.1 373 FCSK 376
                     *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-13799IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1310101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.40511101IPR003340B3 DNA binding domain
SMARTSM010197.0E-1414103IPR003340B3 DNA binding domain
CDDcd100171.45E-81498No hitNo description
Gene3DG3DSA:2.40.330.108.1E-18157255IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.365163260IPR003340B3 DNA binding domain
SMARTSM010196.6E-21163260IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-15165247IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-17168259IPR003340B3 DNA binding domain
CDDcd100172.18E-14170258No hitNo description
Gene3DG3DSA:2.40.330.101.3E-14275376IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-10279367No hitNo description
SuperFamilySSF1019363.34E-15279376IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-17280376IPR003340B3 DNA binding domain
SMARTSM010194.0E-20280377IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224280376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAVPPSSPKS NTPFFVVSLA SHNSNPIIPD AFFTTHLDGN NELTKLKLTS DACDTTWQVK  60
LNGRRFADGW EDFSNAHCLR NDDVLLFRED GEMIFHVTPS GRSFSQIHYI SSSSDDSEAD  120
ETDDNTDDDD HDDETWDKVS YSRNYSPKKR SRLKTESSSI ENSCILGVTS SNLRLNRVAL  180
AKSFTKANGL HKSWCEINVM NQSGKSWVMG LRHNKGTGQD FMRGGWRSFC RANKLRTGSF  240
YRFEFVLTRT RRTLKLCSKA KVSAKPNRAG QRSSMNRSRF MTVTLKAYML KSRQLHFRNS  300
FARENGIKKG GKINLVDKNG GTWPSCVASG YVNGGFYLAK GWISFCKASG ITTGETFTLK  360
FVREKGKTPM LQFCSKAKTK VNTETRFQKK ASVSVEGEPS RRTHASHKST ADSQNLECKQ  420
PLETIYHQVR QSMMNVLADV RRFGSELEIK EQNLEAVLEE IDLLGEKVSE INKLFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620599.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM3-like
SwissprotQ8VZQ91e-171REM3_ARATH; B3 domain-containing protein REM3
TrEMBLA0A3P5Z5B70.0A0A3P5Z5B7_BRACM; Uncharacterized protein
STRINGBra011286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.11e-173B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]