PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013620982.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 249aa MW: 28734.3 Da PI: 5.0776

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.6	2.9e-24	117	167	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s yF++pi++AA eL+v+lT+LKr+CR++G RWPhRk+ sl XP_013620982.1 117 SKALSMETISLYFYMPITQAATELNVGLTLLKRRCRELGFTRWPHRKLISL 167 5899*******************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.279	95	188	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-19	120	167	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MADHTLNEEN PFSVPTHSLS FDNHSLLMDP SFEWEEEHLF MNNSVYEAFP LPTPLPDLEP 60 LSQDVLESYS SASWNVTDQN SGQGDLEQNT EQEAVQETTN KRKINRYVTT YTTFSTSKAL 120 SMETISLYFY MPITQAATEL NVGLTLLKRR CRELGFTRWP HRKLISLLAL ISNVKLQEFE 180 GGENAEKLKN ALLEMLENQK KRIEENPDLE FDDKTKRLRQ ACFKATHKMK KKASLKSDDH 240 LCGFTNEFN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620982.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620982.1	0.0	PREDICTED: protein RKD2-like
Swissprot	Q9CA66	6e-91	RKD2_ARATH; Protein RKD2
TrEMBL	A0A078HX63	0.0	A0A078HX63_BRANA; BnaC02g22910D protein
STRING	Bra008153.1-P	1e-168	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	8e-83	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]