PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013621022.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 165aa MW: 19520.9 Da PI: 4.8092

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013621022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.9e-20	4	57	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le Fe+++++ ++e++A +lgL+ rqV vWFqNrRa++k+ XP_013621022.1 4 KRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 57 4589************************************************95 PP
2	HD-ZIP_I/II	122.7	1.8e-39	3	94	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++Le++v +L+e+l+e XP_013621022.1 3 RKRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDSVVLGQCQLESQVLKLTEQLSE 94 8****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.9E-18	1	62	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.746	1	58	IPR001356	Homeobox domain
CDD	cd00086	2.06E-14	3	59	No hit	No description
SuperFamily	SSF46689	9.19E-18	4	65	IPR009057	Homeodomain-like
Pfam	PF00046	2.0E-17	4	57	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-20	5	65	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	29	38	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	33	56	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	38	54	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MFRKRKLTDE QVTMLEYSFE NEHKLESGRK EKIAGELGLD PRQVAVWFQN RRARWKNKKL 60 EEEYAKLKSQ HDSVVLGQCQ LESQVLKLTE QLSEAQNEIR KLSERLVVQE TSTSSSSFSV 120 EANDAPTDFE FSPMDTINYN IPLYMLDNNY YLQNMEYWDG LYVQF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269\|PubMed:15567172, ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269\|PubMed:15567172}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013621022.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269\|PubMed:15567172, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189258	1e-127	AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013621022.1	1e-120	PREDICTED: homeobox-leucine zipper protein ATHB-53-like
Swissprot	Q9LVR0	2e-91	ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBL	A0A078JHB8	1e-119	A0A078JHB8_BRANA; BnaCnng53110D protein
TrEMBL	A0A0D3AYU4	1e-119	A0A0D3AYU4_BRAOL; Uncharacterized protein
STRING	Bo2g167730.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12602	17	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66700.1	2e-91	homeobox 53

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]