PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621117.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 274aa    MW: 31340.2 Da    PI: 8.6556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-184393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  XP_013621117.1 43 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 93
                    699*******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-3343103No hitNo description
PfamPF008475.9E-134393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2844102IPR001471AP2/ERF domain
SMARTSM003807.0E-3944107IPR001471AP2/ERF domain
PROSITE profilePS5103219.82344101IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1944101IPR016177DNA-binding domain
PRINTSPR003674.7E-84556IPR001471AP2/ERF domain
PRINTSPR003674.7E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MYSYKYLHFN HLCTTDSYKK KMEQKTTQKK KTKEKSKDNN KKTKFVGVRQ RPSGKWVAEI  60
KDTTQKIRMW LGTFETAEEA ARAYDEAACL LRGSNTRTNF ANHFPNNSQL SLKIRNLLHQ  120
KQSMKQQQQK QHNKHISSIA ECNINYTSPA TSPTASTTTT MMPLNDVYRP DSTIISQPET  180
ESIHLPYSCT FVSGFNHLVP MTHGGEETHE HLNNPYSADQ HLGLADIERE ISASLYAMNG  240
ATTYYNNMNA EYAIFDPTDP IWDLPSLSQL FCPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1541100262ATERF1
3gcc_A5e-1541100262ATERF1
5wx9_A2e-14441101481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621117.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_013676020.10.0ethylene-responsive transcription factor RAP2-11-like
RefseqXP_022551560.10.0ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-131RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0D3AK060.0A0A0D3AK06_BRAOL; Uncharacterized protein
STRINGBo2g018360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-103related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]