PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621500.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 436aa    MW: 48797 Da    PI: 6.9444
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.25e-25115168155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F+ av++  G+ +A+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
  XP_013621500.1 115 KPRVIWTRELHNKFLAAVDHV-GIMNAVPKKILDLMNVDNLTRENVASHLQKFRL 168
                     79*******************.9*******************************8 PP
2Response_reg38.65.7e-1415653109
                     CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     mp+mdG++ll+     e++lp+i+++ah++++++ + +k Ga d+l Kp+ +eel +
  XP_013621500.1   1 MPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKN 56 
                     9*********87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-17167IPR011006CheY-like superfamily
CDDcd001562.17E-15161No hitNo description
PROSITE profilePS5011026.152162IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-11156IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.8E-221106No hitNo description
Gene3DG3DSA:1.10.10.601.2E-26112173IPR009057Homeodomain-like
PROSITE profilePS5129412.315112171IPR017930Myb domain
SuperFamilySSF466892.33E-18114172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-23115168IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMLSAHSDP KYVMKGVKHG ACDYLLKPVR IEELKNIWQH  60
VVRKSKLKKM KGIVTNGESE GNSDQNGVRA NRKRKDQLEE KDEEEQEQER GNDKKPRVIW  120
TRELHNKFLA AVDHVGIMNA VPKKILDLMN VDNLTRENVA SHLQKFRLAL KKITNEAKQQ  180
ANMAAANSHF MQMSSLKGFG SFHHSPIPLG SSQFHGGAAT MRHYPSNRTF AGMFPHVSSS  240
LPRNLHNDGG HMLQGTPFPP LENLHINSNN KAFPSFASQQ SSLLVAPSMV LEGHQQSTSP  300
SFSPHLEINK RLEDWSNNIP QSNVHSEPDA LGWNMFGNST NQTYFCRDTE FGSSSAAQAD  360
SLQMKQQHEN IFSPMTVAQL LRSSSANEGL FMGQQKLENG FMASDAGSLD DIVNSMMTQQ  420
EQSQAEFSEG DWVWVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-29114174464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535331e-111AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621510.10.0PREDICTED: two-component response regulator ARR10-like isoform X3
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A0D3A2Q80.0A0A0D3A2Q8_BRAOL; Two-component response regulator
STRINGBo1g010830.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]