PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621510.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 507aa    MW: 56811.2 Da    PI: 6.4724
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96.2e-25186239155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F+ av++  G+ +A+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
  XP_013621510.1 186 KPRVIWTRELHNKFLAAVDHV-GIMNAVPKKILDLMNVDNLTRENVASHLQKFRL 239
                     79*******************.9*******************************8 PP
2Response_reg84.33.7e-28191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+++ + +l+++l + +y +v+++d+++ a+ell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ + +k G
  XP_013621510.1  19 VLAVDDDQTCLLILETLLHRCQY-HVTTTDKAQTAVELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHG 111
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_013621510.1 112 ACDYLLKPVRIEELKN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.1E-4316177No hitNo description
SuperFamilySSF521721.42E-3516138IPR011006CheY-like superfamily
SMARTSM004482.9E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.97318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2519127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.72E-2820132No hitNo description
PROSITE profilePS5129412.315183242IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26183244IPR009057Homeodomain-like
SuperFamilySSF466893.05E-18185243IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-23186239IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MTVEQGVQAV DQFPVGMRVL AVDDDQTCLL ILETLLHRCQ YHVTTTDKAQ TAVELLRENK  60
NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV  120
RIEELKNIWQ HVVRKSKLKK MKGIVTNGES EGNSDQNGVR ANRKRKDQLE EKDEEEQEQE  180
RGNDKKPRVI WTRELHNKFL AAVDHVGIMN AVPKKILDLM NVDNLTRENV ASHLQKFRLA  240
LKKITNEAKQ QANMAAANSH FMQMSSLKGF GSFHHSPIPL GSSQFHGGAA TMRHYPSNRT  300
FAGMFPHVSS SLPRNLHNDG GHMLQGTPFP PLENLHINSN NKAFPSFASQ QSSLLVAPSM  360
VLEGHQQSTS PSFSPHLEIN KRLEDWSNNI PQSNVHSEPD ALGWNMFGNS TNQTYFCRDT  420
EFGSSSAAQA DSLQMKQQHE NIFSPMTVAQ LLRSSSANEG LFMGQQKLEN GFMASDAGSL  480
DDIVNSMMTQ QEQSQAEFSE GDWVWVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-29185245464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535330.0AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621510.10.0PREDICTED: two-component response regulator ARR10-like isoform X3
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A0D3A2Q80.0A0A0D3A2Q8_BRAOL; Two-component response regulator
STRINGBo1g010830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]