PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621963.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 369aa    MW: 40563.5 Da    PI: 8.4843
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.14e-3875136263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg+++knk+sss
  XP_013621963.1  75 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSKKNKRSSS 136
                     6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-2774126IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3277133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.42579133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009416Biological Processresponse to light stimulus
GO:0009845Biological Processseed germination
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDATKWTQGF QDMMNVKPME QIMIPNNNTH QSNTTSDARP NTILTSNGVS AAGATVSGVS  60
NNNNTAVVVE RKARPQEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR  120
NVPVGGSSKK NKRSSSSSNI LQATPSSVGL TTTLPDLNPP ILFSNQIPNK SKGPSHDLNL  180
LSFPVMQDQN HHHHGHMSQF LQMPKMEGNG NITHQRPSSL YGSSSSPVSA LELLRTGANV  240
SSRSGINSFM PSGPMLDSSN NVLYTSSGFP TMVDYKPSNL SFSTDHHQEM GHNHTSRSDD  300
HNDHHQGRIL FPFGDQMKEL TSSITQEVDH DDNQQQKTHG DNNNNNSSSS PNTGYWSGMF  360
NTTGGGSSW
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00319DAPTransfer from AT2G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
GenBankAC2410330.0AC241033.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621963.10.0PREDICTED: dof zinc finger protein DOF2.5-like
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLA0A0D3B7100.0A0A0D3B710_BRAOL; Uncharacterized protein
STRINGBo3g039340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.20.0Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]