PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622020.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 493aa    MW: 55669.7 Da    PI: 7.44
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-1323901797
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ++  +f+++h       k l + d+s + W+vkl  ++++   + ++GW+eF+ka+   +gD++vF++dg++ f  +v v 
  XP_013622020.1 23 TVDDEFLKKHT------KVLLISDSSEKIWKVKL--DGSR---LAGGGWEEFAKAHSFIDGDVLVFRHDGNEIF--HVAVS 90
                    34445555554......3477888999*******..8888...889***********************99999..55544 PP
2B363.53.4e-20147243198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ + +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W++ l+ + +sg +++++GW +F++ang+ +gD++ Fkl++ +++++v++
  XP_013622020.1 147 FLRARVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLCLSKNSTSGVFYIRRGWVNFCSANGISQGDICKFKLSE-NGERPVLR 240
                     667788999*************7666444556669***************77777777*************************987.67779999 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_013622020.1 241 LCP 243
                     986 PP
3B364.81.4e-20286383199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++k ng+k++D++v++l+++ +++  
  XP_013622020.1 286 FLTVKLTPSRLQTGQLYISSVFVNESGIKK--SGEITLMNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKTNGVKVNDSFVLELVWEdDDA-- 376
                     77888999***************9999885..458***************9966655556***************************975666.. PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     v+k+++k
  XP_013622020.1 377 VLKFCSK 383
                     8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.562193IPR003340B3 DNA binding domain
CDDcd100173.66E-10189No hitNo description
SMARTSM010192.7E-121093IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-122790IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-112889IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-82989IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565147244IPR003340B3 DNA binding domain
PfamPF023624.7E-18147243IPR003340B3 DNA binding domain
SMARTSM010194.2E-23147245IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-18149245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-17151244IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-18157243No hitNo description
Gene3DG3DSA:2.40.330.102.0E-19281383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19285384IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-14286373No hitNo description
PROSITE profilePS5086312.929286386IPR003340B3 DNA binding domain
PfamPF023621.3E-21286383IPR003340B3 DNA binding domain
SMARTSM010196.6E-26286384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MTIPPKFSLF HRRFITGDKP VLTVDDEFLK KHTKVLLISD SSEKIWKVKL DGSRLAGGGW  60
EEFAKAHSFI DGDVLVFRHD GNEIFHVAVS PRSDSWDIRH HTSPSLVDTD DAVSDDESDD  120
EEEESDDDAG DISVNKKKNK EAGFSCFLRA RVTPYSLIKD RLDLSKDFTV VSFNEHNKPC  180
EIDLVNEKGR KWTLCLSKNS TSGVFYIRRG WVNFCSANGI SQGDICKFKL SENGERPVLR  240
LCPSSNSHEE EEECPEVDAV KTSSVGGCSK EKRKGKGKKQ NTPSQFLTVK LTPSRLQTGQ  300
LYISSVFVNE SGIKKSGEIT LMNQDGRKWP SYLQMTGQCG SEWFYLRHGW REMCKTNGVK  360
VNDSFVLELV WEDDDAVLKF CSKVENKGNG SGRPRKKRVC ETPIVETEKR KRGRPRVSNT  420
NSSNLRRTQQ ESLSVSDQVA NVKLSILDTL NTVRQFRADI EAREKNLEAS SLEVDALGER  480
ILGINQILNN YLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395411KKRVCETPIVETEKRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622020.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X2
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3BLY80.0A0A0D3BLY8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BTH90.0A0A3P6BTH9_BRAOL; Uncharacterized protein
STRINGBo3g173800.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-163B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]