PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622499.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 640aa MW: 70894.1 Da PI: 6.0065

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.8e-16	352	390	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013622499.1 352 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 390 689**********************************96 PP
2	TCR	52.2	1.2e-16	438	476	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013622499.1 438 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 476 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	351	392	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.394	352	478	IPR005172	CRC domain
Pfam	PF03638	7.0E-12	354	389	IPR005172	CRC domain
SMART	SM01114	4.2E-17	438	479	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.0E-12	440	476	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP 60 VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC 120 ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD 180 SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL 240 AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGSITPV 300 HSQDTVPETL DQAESQPGEE APKALVFEEL IPDSLQKKKQ VLEGGEGEGE SSCKRCNCKK 360 SKCLKLYCEC FAAGVYCIEP CSCVDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNSD 420 SSIMDTSDDA SKTPASARHK RGCNCKKSNC LKKYCECYQS GVGCSINCRC EGCKNAFGRK 480 DAYLHTIMES KQEDDHETYE KRTEKIQQNS KEVEQNPQPS TPLPPYRNLV VHQPFLSRNK 540 LPPTQFFLGA GSSSFRKPDC DVTQSMNEKK SLETVTEDKT EIMPDILNTS PIKANSPNSK 600 RVSPAHIGPS EPGSILGKRS NGRKLILRSI PAFPSLNPNQ

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP  60
VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC  120
ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD  180
SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL  240
AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGSITPV  300
HSQDTVPETL DQAESQPGEE APKALVFEEL IPDSLQKKKQ VLEGGEGEGE SSCKRCNCKK  360
SKCLKLYCEC FAAGVYCIEP CSCVDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNSD  420
SSIMDTSDDA SKTPASARHK RGCNCKKSNC LKKYCECYQS GVGCSINCRC EGCKNAFGRK  480
DAYLHTIMES KQEDDHETYE KRTEKIQQNS KEVEQNPQPS TPLPPYRNLV VHQPFLSRNK  540
LPPTQFFLGA GSSSFRKPDC DVTQSMNEKK SLETVTEDKT EIMPDILNTS PIKANSPNSK  600
RVSPAHIGPS EPGSILGKRS NGRKLILRSI PAFPSLNPNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-17	356	475	14	120	Protein lin-54 homolog
5fd3_B	8e-17	356	475	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	270	RRRCLDFEVPGKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622499.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622499.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X3
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A0D3BCT7	0.0	A0A0D3BCT7_BRAOL; Uncharacterized protein
STRING	Bo3g081390.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]