PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622509.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 177aa    MW: 20459.5 Da    PI: 6.2828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM262.5e-081613410126
             NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kge 98 
                     +d+e++  +L++k+eg+ + +   i e+  ++y+ ePw Lp++++   + +ew +  k +++       n  + ++g W   g+   + s+ ++e
  XP_013622509.1  16 SDSEIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPQTAHPilNPREWLYLGKPNRN-------NFpVDHEGCWVRIGSAILIRSEeTDE 103
                     699***************9998889998778**********533323466788777766553.......3336789********99999975666 PP

             NAM  99 lvglkktLvfy...kgrapkgektdWvmhey 126
                      +g    + +    kg+++  + ++W+m+e 
  XP_013622509.1 104 IIGGTSRFRYRfrnKGDKHALRWSNWFMKEC 134
                     78988888887777788999999******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.1337156IPR003441NAC domain
SuperFamilySSF1019416.02E-1316138IPR003441NAC domain
Gene3DG3DSA:3.10.180.101.3E-10128168IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SuperFamilySSF545931.52E-5131168IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTTRMAGFGE EESGISDSEI IEGFLRPKIE GEAVAIPGLI VELGEELYTR EPWLLPQTAH  60
PILNPREWLY LGKPNRNNFP VDHEGCWVRI GSAILIRSEE TDEIIGGTSR FRYRFRNKGD  120
KHALRWSNWF MKECKASLDF YSRVLGMSLL KRLDFSEMKF SLYFLGYEVK IFSVTLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7204964e-38KT720496.1 Brassica napus cultivar 2682 glyoxalase I (GLYI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622509.11e-128PREDICTED: uncharacterized protein LOC106328580 isoform X1
TrEMBLA0A3P6ANR71e-92A0A3P6ANR7_BRAOL; Uncharacterized protein
STRINGBra025701.1-P2e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.11e-38NAC domain containing protein 27