PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622520.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 352aa    MW: 40355.2 Da    PI: 6.3663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.81.6e-3098551128
             NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k++++ewyf++  dkky +g r nr+t+ gyWkatgkd+e+ + +++  g+kktLvf++grap+g +t+Wvmheyrl
  XP_013622520.1   9 LKTRDQEWYFYCALDKKYGNGARMNRSTNIGYWKATGKDREIRR-DDQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 85 
                     567899*************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.3951109IPR003441NAC domain
SuperFamilySSF1019413.79E-358109IPR003441NAC domain
PfamPF023651.6E-131485IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MYVPVFSRLK TRDQEWYFYC ALDKKYGNGA RMNRSTNIGY WKATGKDREI RRDDQILGMK  60
KTLVFHSGRA PDGLRTNWVM HEYRLVDYET ESNGNLVQDA YVLVKVFHKK NIGPPSANRY  120
APFIEEEWAD DGVVRVRAEP LPLANGNNQM DQSESKELIN INETPREVTP VDMEVNHQEN  180
ALKPQENNNN NNHCDEDEKA LKREHADKVE RPPPPPLPLL QYKRRRQNES NNKNSSRTTQ  240
ESSTTTTLIS SSAAAAATST AISALLEFSL MDISEKKPLH KEGSHPTPLP SHEEKLNDLY  300
KEIHEMSVER ETFKLEMMSA EAMISILQSR IDALRQENDE LKKNSEKGQA TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-271311173170NAC domain-containing protein 19
3swm_B3e-271311173170NAC domain-containing protein 19
3swm_C3e-271311173170NAC domain-containing protein 19
3swm_D3e-271311173170NAC domain-containing protein 19
3swp_A3e-271311173170NAC domain-containing protein 19
3swp_B3e-271311173170NAC domain-containing protein 19
3swp_C3e-271311173170NAC domain-containing protein 19
3swp_D3e-271311173170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667531e-127KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622520.10.0PREDICTED: NAC domain-containing protein 53-like isoform X2
SwissprotQ9SQX91e-163NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A0D3BAK80.0A0A0D3BAK8_BRAOL; Uncharacterized protein
STRINGBo3g062710.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-150NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]