PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622680.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 236aa MW: 26844.7 Da PI: 8.2385

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	106.2	1.6e-33	32	141	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ ++ +e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v F++ XP_013622680.1 32 FEKSLTPSDVGKLNRLVIPKQHAEKYlplnngggeltSETTEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGDVVFFQR 126 99****************************99999777889*************************************************6 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 + r + +l+++++r+ XP_013622680.1 127 H-RfDFHRLFIGWRRR 141 5.44888899999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-39	24	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-31	28	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.92E-30	31	132	No hit	No description
Pfam	PF02362	1.6E-30	32	141	IPR003340	B3 DNA binding domain
SMART	SM01019	9.0E-25	32	142	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.789	32	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MLGNHYSRDI HHNTLSLHSH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL 60 NNGGGELTSE TTEKGMLLSF EDESGKSWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD 120 VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTV YWSGLTTPYR QVQASTSSYP 180 NIHQEYSQYG AVAETPTVVA GSSRTVRLFG VNLECHGDVV ETPPCSDGYN GQHIYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-48	26	141	2	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-48	26	141	2	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622680.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622680.1	1e-178	PREDICTED: B3 domain-containing protein At3g11580-like
Refseq	XP_013644761.1	1e-178	B3 domain-containing protein At3g11580-like
Swissprot	Q8RYD3	1e-124	Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBL	A0A0D3BAS0	1e-176	A0A0D3BAS0_BRAOL; Uncharacterized protein
STRING	Bo3g064320.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	1e-126	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]