PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623119.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 436aa    MW: 50384.9 Da    PI: 10.0336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.5e-18641391194
                     HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     + s+ l++p  f+++h + k+++kt++l++  s ++Wevk+  ++++    lt+GWk+F  a++L+ gD+++Fk++g++ f  +v
  XP_013623119.1  64 FHSH-LTIPVVFFSKHIHGKTKKKTVKLRSdASDKTWEVKI--DGRR----LTRGWKDFTTAHDLRIGDIIIFKHEGDMVF--NV 139
                     4555.***********55567889****997899*******..9998....************************999988..54 PP
2B372.17e-23199293398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lk++ l+lp   ++++ ++k+++ +++l +++g+sW+  l++r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++++ v+
  XP_013623119.1 199 VSEVTTSNLKLDTLYLPVGATSSNALNKRCH-EMILVNKEGNSWTASLKFRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTPMMCVC 292
                     45678999*******************9887.*****************************************************9999**9999 PP

                     - CS
              B3  98 r 98 
                      
  XP_013623119.1 293 P 293
                     6 PP
3B339.69.4e-13331428199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefelv 93 
                     f++++++ +++ s+ l+lp  f++++g++  + k+++l+d++g +   kl     + +r  l+kGWk F++an++ k g+++v++l++ +++ +v
  XP_013623119.1 331 FLTITLTRYNFISSKLILPIAFTNTNGLS--NYKEIILMDKHGVKRLTKLVQdGPHNNRKGLGKGWKFFCEANDVfKIGESFVLELVW-EDTVPV 422
                     778888999999**************999..5669**************977744555566*************846***********.78889* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  XP_013623119.1 423 LKFCSK 428
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-2450147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2251151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90153145IPR003340B3 DNA binding domain
CDDcd100171.99E-1554142No hitNo description
SMARTSM010192.1E-2456145IPR003340B3 DNA binding domain
PfamPF023622.4E-1265137IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-19195286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-19195286IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-17196293No hitNo description
PROSITE profilePS5086313.507197295IPR003340B3 DNA binding domain
SMARTSM010192.1E-24198295IPR003340B3 DNA binding domain
PfamPF023627.3E-22199293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15323428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15325427IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-9330427No hitNo description
PfamPF023621.8E-12331428IPR003340B3 DNA binding domain
PROSITE profilePS508638.572331428IPR003340B3 DNA binding domain
SMARTSM010192.1E-17331429IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MKTRKSETLT FSIKHNFSFS FTSQEKVSNN SLQFLFLFEL FEMVNPPLQS PTNPHFFQPL  60
LPGFHSHLTI PVVFFSKHIH GKTKKKTVKL RSDASDKTWE VKIDGRRLTR GWKDFTTAHD  120
LRIGDIIIFK HEGDMVFNVT PFGPSCCEIQ YTQSHIIKEE ADTDDDDDED DNERRYKIRN  180
GLKPKTEPMS SFSFHHCFVS EVTTSNLKLD TLYLPVGATS SNALNKRCHE MILVNKEGNS  240
WTASLKFRES GGMYYIRRGW RRFCLDNRRK VGDLFVFNLV GDGKTTPMMC VCPEEECSEL  300
MSKHLSRGRR SRKTKKRSKW VASSSSRRNR FLTITLTRYN FISSKLILPI AFTNTNGLSN  360
YKEIILMDKH GVKRLTKLVQ DGPHNNRKGL GKGWKFFCEA NDVFKIGESF VLELVWEDTV  420
PVLKFCSKVK VETVNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894644e-71AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623119.10.0PREDICTED: B3 domain-containing protein REM7 isoform X1
TrEMBLA0A0D3BLY20.0A0A0D3BLY2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BE350.0A0A3P6BE35_BRAOL; Uncharacterized protein
STRINGBo3g173740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-87B3 family protein