PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623120.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 431aa    MW: 49668 Da    PI: 9.8682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-18641391194
                     HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     + s+ l++p  f+++h + k+++kt++l++  s ++Wevk+  ++++    lt+GWk+F  a++L+ gD+++Fk++g++ f  +v
  XP_013623120.1  64 FHSH-LTIPVVFFSKHIHGKTKKKTVKLRSdASDKTWEVKI--DGRR----LTRGWKDFTTAHDLRIGDIIIFKHEGDMVF--NV 139
                     4555.***********55567889****997899*******..9998....************************999988..54 PP
2B372.16.9e-23194288398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lk++ l+lp   ++++ ++k+++ +++l +++g+sW+  l++r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++++ v+
  XP_013623120.1 194 VSEVTTSNLKLDTLYLPVGATSSNALNKRCH-EMILVNKEGNSWTASLKFRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTPMMCVC 287
                     45678999*******************9887.*****************************************************9999**9999 PP

                     - CS
              B3  98 r 98 
                      
  XP_013623120.1 288 P 288
                     6 PP
3B339.69.2e-13326423199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefelv 93 
                     f++++++ +++ s+ l+lp  f++++g++  + k+++l+d++g +   kl     + +r  l+kGWk F++an++ k g+++v++l++ +++ +v
  XP_013623120.1 326 FLTITLTRYNFISSKLILPIAFTNTNGLS--NYKEIILMDKHGVKRLTKLVQdGPHNNRKGLGKGWKFFCEANDVfKIGESFVLELVW-EDTVPV 417
                     778888999999**************999..5669**************977744555566*************846***********.78889* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  XP_013623120.1 418 LKFCSK 423
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2450147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2251151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90153145IPR003340B3 DNA binding domain
CDDcd100171.66E-1554142No hitNo description
SMARTSM010192.1E-2456145IPR003340B3 DNA binding domain
PfamPF023622.4E-1265137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-19190281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-19190281IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-17191288No hitNo description
PROSITE profilePS5086313.507192290IPR003340B3 DNA binding domain
SMARTSM010192.1E-24193290IPR003340B3 DNA binding domain
PfamPF023627.1E-22194288IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-15318423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15320422IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-9325422No hitNo description
PROSITE profilePS508638.572326423IPR003340B3 DNA binding domain
SMARTSM010192.1E-17326424IPR003340B3 DNA binding domain
PfamPF023621.7E-12326423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKTRKSETLT FSIKHNFSFS FTSQEKVSNN SLQFLFLFEL FEMVNPPLQS PTNPHFFQPL  60
LPGFHSHLTI PVVFFSKHIH GKTKKKTVKL RSDASDKTWE VKIDGRRLTR GWKDFTTAHD  120
LRIGDIIIFK HEGDMVFNVT PFGPSCCEIQ YTQSHIIKEE ADTDDDDDED DNERNGLKPK  180
TEPMSSFSFH HCFVSEVTTS NLKLDTLYLP VGATSSNALN KRCHEMILVN KEGNSWTASL  240
KFRESGGMYY IRRGWRRFCL DNRRKVGDLF VFNLVGDGKT TPMMCVCPEE ECSELMSKHL  300
SRGRRSRKTK KRSKWVASSS SRRNRFLTIT LTRYNFISSK LILPIAFTNT NGLSNYKEII  360
LMDKHGVKRL TKLVQDGPHN NRKGLGKGWK FFCEANDVFK IGESFVLELV WEDTVPVLKF  420
CSKVKVETVN V
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894644e-71AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623120.10.0PREDICTED: B3 domain-containing protein REM7 isoform X2
TrEMBLA0A0D3BLY20.0A0A0D3BLY2_BRAOL; Uncharacterized protein
STRINGBo3g173740.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-89B3 family protein