PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623121.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 329aa    MW: 37368.6 Da    PI: 10.4617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-2392186398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lk++ l+lp   ++++ ++k+++ +++l +++g+sW+  l++r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++++ v+
  XP_013623121.1  92 VSEVTTSNLKLDTLYLPVGATSSNALNKRCH-EMILVNKEGNSWTASLKFRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTPMMCVC 185
                     45678999*******************9887.*****************************************************9999**9999 PP

                     - CS
              B3  98 r 98 
                      
  XP_013623121.1 186 P 186
                     6 PP
2B340.35.6e-13224321199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefelv 93 
                     f++++++ +++ s+ l+lp  f++++g++  + k+++l+d++g +   kl     + +r  l+kGWk F++an++ k g+++v++l++ +++ +v
  XP_013623121.1 224 FLTITLTRYNFISSKLILPIAFTNTNGLS--NYKEIILMDKHGVKRLTKLVQdGPHNNRKGLGKGWKFFCEANDVfKIGESFVLELVW-EDTVPV 315
                     778888999999**************999..5669**************977744555566*************846***********.78889* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  XP_013623121.1 316 LKFCSK 321
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1988179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1988179IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-1889186No hitNo description
PROSITE profilePS5086313.50790188IPR003340B3 DNA binding domain
SMARTSM010192.1E-2491188IPR003340B3 DNA binding domain
PfamPF023624.4E-2292186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-16216321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15218320IPR015300DNA-binding pseudobarrel domain
CDDcd100178.41E-10223320No hitNo description
PROSITE profilePS508638.572224321IPR003340B3 DNA binding domain
PfamPF023621.1E-12224321IPR003340B3 DNA binding domain
SMARTSM010192.1E-17224322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGDSPEGGK TSPQHMTLES ETLLFSNTKE IWCSMSLLLV LAVARFSIHN LTSSRKKLTL  60
MMMTTKMTMS VGNGLKPKTE PMSSFSFHHC FVSEVTTSNL KLDTLYLPVG ATSSNALNKR  120
CHEMILVNKE GNSWTASLKF RESGGMYYIR RGWRRFCLDN RRKVGDLFVF NLVGDGKTTP  180
MMCVCPEEEC SELMSKHLSR GRRSRKTKKR SKWVASSSSR RNRFLTITLT RYNFISSKLI  240
LPIAFTNTNG LSNYKEIILM DKHGVKRLTK LVQDGPHNNR KGLGKGWKFF CEANDVFKIG  300
ESFVLELVWE DTVPVLKFCS KVKVETVNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894644e-70AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623121.10.0PREDICTED: B3 domain-containing protein REM14 isoform X3
TrEMBLA0A0D3BLY21e-177A0A0D3BLY2_BRAOL; Uncharacterized protein
TrEMBLA0A397YFK21e-179A0A397YFK2_BRACM; Uncharacterized protein
STRINGBo3g173740.11e-178(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-51B3 family protein