PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623173.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 398aa MW: 44067.9 Da PI: 7.0225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	7.2e-05	279	317	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013623173.1 279 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 317 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-11	277	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.29E-5	277	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-8	281	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEPRRNCVSL SHNFNNEMLN TRDENNNNNN STSECMSLSN IHNHSLIQQQ DFPLQWTHNE 60 SSYHHHEGLH KIKEELSSAT TSDHQQGMPR FTDMLNSPVI TNYLKINEHK DYTEKLLLNT 120 ISSGFPINGD YSNSLPSSSS SSSPSSQSHR GSFSQIYPSV NISSLSESQR ISNIPRPFDM 180 NMQVLDGRLF EGNVLVPPLN SQEIRGNFTP FGLPFHHHLQ QTLHHPSSSP SHQMEIYSNE 240 PQASEGKRHN FVMAPKAGET ASKKPRVESR SSCPPFKVRK EKLGDRIAAL QQLVSPFGKT 300 DTASVLMEAI GYIKFLQSQI ETLSVPYMRA SRNRPGKASQ LGSIPQEGDE EETRDLRSRG 360 LCLVPLSCMT YVTGDGGDGG GGVGSGFWPT PPGFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEPRRNCVSL SHNFNNEMLN TRDENNNNNN STSECMSLSN IHNHSLIQQQ DFPLQWTHNE  60
SSYHHHEGLH KIKEELSSAT TSDHQQGMPR FTDMLNSPVI TNYLKINEHK DYTEKLLLNT  120
ISSGFPINGD YSNSLPSSSS SSSPSSQSHR GSFSQIYPSV NISSLSESQR ISNIPRPFDM  180
NMQVLDGRLF EGNVLVPPLN SQEIRGNFTP FGLPFHHHLQ QTLHHPSSSP SHQMEIYSNE  240
PQASEGKRHN FVMAPKAGET ASKKPRVESR SSCPPFKVRK EKLGDRIAAL QQLVSPFGKT  300
DTASVLMEAI GYIKFLQSQI ETLSVPYMRA SRNRPGKASQ LGSIPQEGDE EETRDLRSRG  360
LCLVPLSCMT YVTGDGGDGG GGVGSGFWPT PPGFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623173.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623173.1	0.0	PREDICTED: transcription factor bHLH110 isoform X3
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0D3BIG7	0.0	A0A0D3BIG7_BRAOL; Uncharacterized protein
STRING	Bo3g141780.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]