PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623371.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 316aa    MW: 35738.8 Da    PI: 6.0643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.11.1e-3039144199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +
  XP_013623371.1  39 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFLRCvGDteR 133
                     89****************************66677899************************************************943333256 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  XP_013623371.1 134 DSRLFIDWRRR 144
                     77788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4033146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2936129IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-2537124No hitNo description
SMARTSM010198.8E-2339145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.32539145IPR003340B3 DNA binding domain
PfamPF023626.1E-2839144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMTNLSLARE GEGEEEEEEE EEEAEAKKPT EEVEREHMFD KVVTPSDVGK LNRLVIPKQH  60
AERYFPLDSS SNEKGLLLNF EDLTGKLWRF RYSYWNSSQS YVMTKGWSRF VKDKKLDAGD  120
IVSFLRCVGD TERDSRLFID WRRRPKVPDY PTSTSHFPAG AMFPRFYSFP TATTSTSYNL  180
YNHQQPRHHH SGYCYPQIPR EFGYGYVVRS VDQRAVVADP LVIESVPVMM HGGARMNQAA  240
VGTAGKRLRL FGVDMECGES GVTNSTEEES SSSGGSLPRG GASPSSSMFQ LRLGNSSEDD  300
HLFKKGKSSL PFNLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-75341473116B3 domain-containing transcription factor NGA1
5os9_B2e-75341473116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623371.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-162NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D3B7180.0A0A0D3B718_BRAOL; Uncharacterized protein
STRINGBo3g039420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-149B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]