PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623752.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 177aa    MW: 19710 Da    PI: 5.5612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-052749123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC++C+k++s    L  H+++H
  XP_013623752.1 27 YKCKYCPKTYSKGQALGGHQNVH 49
                    9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.08E-72455No hitNo description
PfamPF139121.5E-62646IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.8222754IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLSSESSYGS DVSDDGIATE LMEQATYKCK YCPKTYSKGQ ALGGHQNVHK REREITKRQE  60
RAMLVSMNPP DPYPYPHPFP SQYALPSGFE QPRYIIDEPD NLHVVYNSSQ NPYQSVMAQP  120
HTQSLLPASS PVCLKLCLGV GSSSQDQTQT KEPNDATKDM AAEKEDHELS LSLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623752.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410480.0AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623752.11e-129PREDICTED: uncharacterized protein LOC106329608
TrEMBLA0A0D3AZT31e-128A0A0D3AZT3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6R5291e-128A0A3N6R529_BRACR; Uncharacterized protein
STRINGBo3g003180.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.19e-38C2H2 family protein