PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623869.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 133aa MW: 14124.6 Da PI: 6.495

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	73.9	2.4e-23	54	104	10	59
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 l+N Aa++Ggha+D C Efmps++ + +++++lkCaACgCH nF Rr++++ XP_013623869.1 54 LQNRAAAIGGHALDVCSEFMPSPTFTsSDPTSLKCAACGCHHNFNRRDPDD 104 78********************99899****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	18.491	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-20	54	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.7E-18	54	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-13	54	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MLEVGAMDMT PKYPAKYPTN PKLRPRSNQL NQSPSATESS NAATTSTTTQ PPSLQNRAAA 60 IGGHALDVCS EFMPSPTFTS SDPTSLKCAA CGCHHNFNRR DPDDSSLTSA VAPPSLLTSS 120 TTAEIEYQPH TVN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623869.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623869.1	2e-93	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	1e-26	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A078FG71	4e-92	A0A078FG71_BRANA; BnaC03g13900D protein
TrEMBL	A0A0D3B396	4e-92	A0A0D3B396_BRAOL; Uncharacterized protein
STRING	Bo3g021250.1	6e-93	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26754	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	6e-27	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]