PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013624055.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 127aa MW: 13503 Da PI: 7.5054

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013624055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	66.6	4.5e-21	48	96	10	57
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 l+N a++Ggh++D C fmps + + +++++l+CaACgCH nFHRr++ XP_013624055.1 48 LQNRTAAIGGHTLDVCSKFMPSLTFTsSDPTSLTCAACGCHHNFHRRDP 96 78******************9998899****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	17.085	44	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-17	48	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-15	48	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.9E-19	48	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MDMTPKYPAK YPTNPKLQPR SNQINQPPSA TESSNAATTS TTTQPPALQN RTAAIGGHTL 60 DVCSKFMPSL TFTSSDPTSL TCAACGCHHN FHRRDPGDSS LTSAVAPPSL LTSSTTAEIE 120 YQPHTVN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013624055.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624055.1	2e-88	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	7e-22	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0D3B834	3e-87	A0A0D3B834_BRAOL; Uncharacterized protein
STRING	Bo3g045060.1	6e-88	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	5e-23	homeobox protein 30

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]