PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624280.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 175aa    MW: 21122.4 Da    PI: 9.6937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.18.3e-1151448128
             NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                      P ++e v +yLk  +++++   ++++++ d+y v+P++  + +++    ++  y F++r +++    ++    +sg W+  g+dk ++s+ + e
  XP_013624280.1   5 YPPEDETVGYYLKMMLDKRNKWPSNFLRSEDVYCVNPRTHFN-TQEpliLHDGRYLFVNRTESSG---KT-DGCDSGCWRIMGRDKLIKSEkSVE 94 
                     5888999*********9999666689***********98742.22222255688****9988653...33.34579*************984445 PP

             NAM  99 lvglkktLvfy....................kgrapkgektdWvmheyrl 128
                       g k+++ f                     k++++   k  Wvm+eyrl
  XP_013624280.1  95 ILGFKRVFRFCekneekpksffkfswekaeeKEKRRARDKRVWVMEEYRL 144
                     589999999997777666666666666554324444456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.1551160IPR003441NAC domain
SuperFamilySSF1019414.32E-225158IPR003441NAC domain
PfamPF023653.0E-95144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTMIYPPEDE TVGYYLKMML DKRNKWPSNF LRSEDVYCVN PRTHFNTQEP LILHDGRYLF  60
VNRTESSGKT DGCDSGCWRI MGRDKLIKSE KSVEILGFKR VFRFCEKNEE KPKSFFKFSW  120
EKAEEKEKRR ARDKRVWVME EYRLASKWKQ DYVICKIRLL NPNPLEFMLS NHVRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017515e-31HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624280.11e-129PREDICTED: uncharacterized protein LOC106330344
RefseqXP_013630765.11e-129PREDICTED: uncharacterized protein LOC106336473
TrEMBLA0A0D3AAE01e-127A0A0D3AAE0_BRAOL; Uncharacterized protein
STRINGBo1g093090.11e-128(Brassica oleracea)
STRINGBo3g081220.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.13e-66NAC family protein