PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624402.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 222aa    MW: 24934.5 Da    PI: 8.2235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1886135255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAe+r p+    + +r +lg+f taeeAa a+++a+ k++g
  XP_013624402.1  86 LYRGVRQRQ-WGKWVAEVRLPK----HrTRLWLGTFKTAEEAALAYDQAAHKIRG 135
                     59****999.**********83....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.04E-3185144No hitNo description
SMARTSM003801.6E-3486149IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2186144IPR016177DNA-binding domain
PROSITE profilePS5103222.48486143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3186144IPR001471AP2/ERF domain
PRINTSPR003673.6E-118798IPR001471AP2/ERF domain
PfamPF008474.5E-1387135IPR001471AP2/ERF domain
PRINTSPR003673.6E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTILNMNGCA EEFMKAVEPF MKVTEPVPLT PDNQTGPIGL NSLTDTQILE IQRELHLRQQ  60
NQARRRGCGA KPTPMKKTNV TRPVKLYRGV RQRQWGKWVA EVRLPKHRTR LWLGTFKTAE  120
EAALAYDQAA HKIRGDNTRL NFPDIDGMSQ LYWLEPWGPI VMLPGWDPNL AFGDGSGTSE  180
VPILDFDDFF ADLPTGFDAP QATSESGRPK FVAEGSRIIN GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1885143463ATERF1
3gcc_A2e-1885143463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133956e-59AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608586e-59AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankBT0257236e-59BT025723.1 Arabidopsis thaliana At5g65130 mRNA, complete cds.
GenBankCP0026886e-59CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471096e-59DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
GenBankDQ6533926e-59DQ653392.1 Arabidopsis thaliana clone 0000013473_0000009703 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624402.11e-166PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ24e-68ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A0D3BEV71e-115A0A0D3BEV7_BRAOL; Uncharacterized protein
STRINGBo3g100470.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-60ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]