PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624421.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 164aa    MW: 19313.4 Da    PI: 10.3784
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.15.7e-19495299
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-.HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvld.eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellek 96
                    F   +yei++d++l+++isws++++sf+++  +e f+kk+L+++F   n++ F+  L++YgF +++ ++++        eF hk+ F +gk ell+k
  XP_013624421.1  4 FHVAVYEIVDDPSLDSTISWSKSNKSFIIWSpKELFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKHyFVRGKPELLTK 92
                    77789*************************8345689999999885.799*******************99.......******989********99 PP

                    XXX CS
    HSF_DNA-bind 97 ikr 99
                    ++ 
  XP_013624421.1 93 MRL 95
                    875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-21196IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.51E-19294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-20390IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-18494IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-5427IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-55567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MYQFHVAVYE IVDDPSLDST ISWSKSNKSF IIWSPKELFT KKILKRFFCC NLSQFITELD  60
TYGFVRIEGS DEQLEFGHKH YFVRGKPELL TKMRLQAAMN RMKKSAQKAK ARAEAEKNGS  120
MTLRREPRII IHADDARMKY KQIFESSSTI AKTPLENRFR HLRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624421.11e-121PREDICTED: heat stress transcription factor A-4a
TrEMBLA0A0D3A4F01e-120A0A0D3A4F0_BRAOL; Uncharacterized protein
STRINGBo1g021700.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.15e-24HSF family protein