PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624761.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 203aa    MW: 22770.9 Da    PI: 8.3964
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind60.76.9e-191110192
       GAGA_bind   1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 
                     m++ g+++  r k+ y++                 ++++l   +++++ms++aerda+++ern al++kk+a+a+rd+a+ qrdkal+er++a++
  XP_013624761.1   1 MESGGQYDngRCKPdYFKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEALAAKKEALAARDEALEQRDKALSERDNAIM 93 
                     88889988899999999999999999998887754446666..99************************************************** PP

       GAGA_bind  76 erdnkllalllvensla 92 
                     er+ +l al + e++  
  XP_013624761.1  94 ERETALNALHYPEKNNL 110
                     ********998877654 PP
2GAGA_bind54.55.1e-17129200149222
       GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                     ++++ +++ ++++ ++k+ +k +e+ ++  ++++  ++ +++++  +++ln v++De+t+PvP+C+CtG+ rqC
  XP_013624761.1 129 NPSHISTKPTKRKIETKQGNKLGEDLNRLAASPG--KKCRKDWDVNEVGLNLVAFDETTMPVPMCTCTGTARQC 200
                     3333333333333344455666777777777777..57************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.1E-351202IPR010409GAGA-binding transcriptional activator
PfamPF062172.7E-2518200IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MESGGQYDNG RCKPDYFKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER  60
NEALAAKKEA LAARDEALEQ RDKALSERDN AIMERETALN ALHYPEKNNL NYILSCAKRG  120
ETERSHLPNP SHISTKPTKR KIETKQGNKL GEDLNRLAAS PGKKCRKDWD VNEVGLNLVA  180
FDETTMPVPM CTCTGTARQC CCG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624761.11e-152PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-100BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A0D3BJA91e-150A0A0D3BJA9_BRAOL; Uncharacterized protein
STRINGBo3g149650.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.28e-84basic pentacysteine 5