PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013624787.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 1495aa MW: 172178 Da PI: 5.3843

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013624787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.3e-12	1332	1378	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN fe Lr++lP++ K +Ka++L ++v+Y k+L XP_013624787.1 1332 KKHSDAERRRRLRINYQFEALRTILPNL-----IKQDKASVLGETVRYFKEL 1378 68***********************9.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-12	1321	1384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	1329	1378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	1332	1378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-7	1332	1382	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-12	1333	1382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	1335	1384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1495 aa Download sequence Send to blast
MEKVYEELDE VKAANEKLRA KTELLENLKK AQNKQLIEIQ EARSVIEKQG FESEEKAREI 60 SELKRTNEDL QRCLREKDSV LKRLNEANDK LRADGEEKHR GFEDERRKLV LALDEAGEKN 120 IDLEQKSNVY RAEIEGLKGT LAVAEKKKIE AEKTVRALKE ARGRDDVAVK LEEEKTQVEE 180 KLKWKKEQFK HLEEAYEKLN NTFKSRKKEW EEERSTILDE IYSLQTKLDS QIRISEDLEK 240 KLQMCNSVLT QEETRRKHLE VQVSELKAKY ENAFAECRDA RTQLDELVGK RDEEVAELRH 300 SLSTKEAYFK EMKYENGKLE LENRELLASL RELQEATIQG SGSSALSKLK SKFRNLENTH 360 KNCSANLRSK ESEWRSQLEK MAEEMNDYKS QLGSKEAAVN ELELELENFH SSADKMRLQY 420 EEISVMFLVL SRTVSEAQSR LVNVTDEQTK DERSKEKRCS TLIEELEQKS VALARAHEET 480 EAERERVACL LKRVETLDHF EEENLHMQKE VERYKQTVEE SSKFQAQMKE KLKEAEIDFE 540 EKLLQVCDAL DNTNSDLVAE REKVVGLTRQ IESFGVIKEK NLVMEKELQK HKEMLEESEK 600 RRVVLEELER DSKENIRELC SKVDTAYAKL AEEVEKNVSL IRKIESIDIN QEQRQRELES 660 YKERLEKATK SQILLQEKVV EVERHSKRKL AEVSEALEAA NCELSDKTSE AYQLEFQLWV 720 WKSIAKRLKV ELEQDQNLRK RVEASLLEQV TLGDAMMQER NELVNKLKAA AMSDSEKEIL 780 IKIMREKDKN LEEVQREVEL SQQESLTREL EGAVFAHITV ERVLQNERDE LETSLKSVSL 840 LLEQKQNEAT MVYKAWEKLA ADKILTEVET EAKKLMIIEL DEDISSISQK LERSDEYVSC 900 FRAEVESKQG ELKEVTTQLQ ERLRTLEADK TELDKQVASL SSERQELLCF ISELENGMSK 960 QCDEDTKLMK ALDKTAQRCD GFGKENNSIG SPRLVMKHED VAVEDRSPAS HMSTVGEVTV 1020 GSQCHKLLGM RDFTSARHLV KMNKQLGKDW QKLDQVEAIC DVIIAAENRL RNGFMDYYGM 1080 LRATRFGPVV LDDFRRLMKL LDWRCNGLPS SQEAAQYAYQ AWSMLSKPVM KARYDLDISS 1140 PMVGMVQLGF PEGSSFVPKE QNPNQDIGRG NDNKVVVISD DDDDENISVL GIHXSPIYYT 1200 FEDLLIDIFV IITRLLVFIF IHNNKTFPSI CFLSISPFSW CRHGFTSTCK SLPFTFSTSN 1260 QSSFLSEXLF XTQLEQGMRP LSQRYNATTY STTMGRNFFT SGTSSSNLFS SRGYSANAKP 1320 KSKTESKEVA AKKHSDAERR RRLRINYQFE ALRTILPNLI KQDKASVLGE TVRYFKELKK 1380 LVNEIPTTPS LEDSLRLGQC KNRDFARVVF SCSDREGLMS EVAESMKAAD AKAVRAEMMT 1440 VGGRTKCVLF VQGVNGNEGL VKLKKALKPV VNRKPEATNN NNGVSVSTSA IREGR

Sequence ? help Back to Top

Protein Sequence Length: 1495 aa Download sequence Send to blast

MEKVYEELDE VKAANEKLRA KTELLENLKK AQNKQLIEIQ EARSVIEKQG FESEEKAREI  60
SELKRTNEDL QRCLREKDSV LKRLNEANDK LRADGEEKHR GFEDERRKLV LALDEAGEKN  120
IDLEQKSNVY RAEIEGLKGT LAVAEKKKIE AEKTVRALKE ARGRDDVAVK LEEEKTQVEE  180
KLKWKKEQFK HLEEAYEKLN NTFKSRKKEW EEERSTILDE IYSLQTKLDS QIRISEDLEK  240
KLQMCNSVLT QEETRRKHLE VQVSELKAKY ENAFAECRDA RTQLDELVGK RDEEVAELRH  300
SLSTKEAYFK EMKYENGKLE LENRELLASL RELQEATIQG SGSSALSKLK SKFRNLENTH  360
KNCSANLRSK ESEWRSQLEK MAEEMNDYKS QLGSKEAAVN ELELELENFH SSADKMRLQY  420
EEISVMFLVL SRTVSEAQSR LVNVTDEQTK DERSKEKRCS TLIEELEQKS VALARAHEET  480
EAERERVACL LKRVETLDHF EEENLHMQKE VERYKQTVEE SSKFQAQMKE KLKEAEIDFE  540
EKLLQVCDAL DNTNSDLVAE REKVVGLTRQ IESFGVIKEK NLVMEKELQK HKEMLEESEK  600
RRVVLEELER DSKENIRELC SKVDTAYAKL AEEVEKNVSL IRKIESIDIN QEQRQRELES  660
YKERLEKATK SQILLQEKVV EVERHSKRKL AEVSEALEAA NCELSDKTSE AYQLEFQLWV  720
WKSIAKRLKV ELEQDQNLRK RVEASLLEQV TLGDAMMQER NELVNKLKAA AMSDSEKEIL  780
IKIMREKDKN LEEVQREVEL SQQESLTREL EGAVFAHITV ERVLQNERDE LETSLKSVSL  840
LLEQKQNEAT MVYKAWEKLA ADKILTEVET EAKKLMIIEL DEDISSISQK LERSDEYVSC  900
FRAEVESKQG ELKEVTTQLQ ERLRTLEADK TELDKQVASL SSERQELLCF ISELENGMSK  960
QCDEDTKLMK ALDKTAQRCD GFGKENNSIG SPRLVMKHED VAVEDRSPAS HMSTVGEVTV  1020
GSQCHKLLGM RDFTSARHLV KMNKQLGKDW QKLDQVEAIC DVIIAAENRL RNGFMDYYGM  1080
LRATRFGPVV LDDFRRLMKL LDWRCNGLPS SQEAAQYAYQ AWSMLSKPVM KARYDLDISS  1140
PMVGMVQLGF PEGSSFVPKE QNPNQDIGRG NDNKVVVISD DDDDENISVL GIHXSPIYYT  1200
FEDLLIDIFV IITRLLVFIF IHNNKTFPSI CFLSISPFSW CRHGFTSTCK SLPFTFSTSN  1260
QSSFLSEXLF XTQLEQGMRP LSQRYNATTY STTMGRNFFT SGTSSSNLFS SRGYSANAKP  1320
KSKTESKEVA AKKHSDAERR RRLRINYQFE ALRTILPNLI KQDKASVLGE TVRYFKELKK  1380
LVNEIPTTPS LEDSLRLGQC KNRDFARVVF SCSDREGLMS EVAESMKAAD AKAVRAEMMT  1440
VGGRTKCVLF VQGVNGNEGL VKLKKALKPV VNRKPEATNN NNGVSVSTSA IREGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013624787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624787.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g38062
Swissprot	P0CB23	0.0	Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBL	A0A078ISV3	0.0	A0A078ISV3_BRANA; BnaC03g61070D protein
STRING	Bo3g153000.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9592	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	0.0	bHLH family protein