PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013624814.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 234aa MW: 26729.9 Da PI: 5.3718

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013624814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7e-20	71	131	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + + +ps++++++L+++l ++ e+++ +WFqNrRa+ k+ XP_013624814.1 71 RQRWTPTPLQLQILERLFDQdTGTPSKQKIKDLTEELsqhgQIAEQNICNWFQNRRARSKR 131 89***************99************************************97 PP
2	Wus_type_Homeobox	91.5	7.7e-30	70	133	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++ + tP+k++i+++t+eL+++G+i ++N+ +WFQNr+aR+++kq XP_013624814.1 70 ARQRWTPTPLQLQILERLFDQDTGTPSKQKIKDLTEELSQHGQIAEQNICNWFQNRRARSKRKQ 133 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-15	66	134	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.657	67	132	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-16	69	134	IPR009057	Homeodomain-like
SMART	SM00389	6.9E-14	69	136	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-17	71	131	IPR001356	Homeobox domain
CDD	cd00086	1.10E-11	71	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MELDNQQQPN PMKVMTDEQL ETLRKQIAIY ATICERLVEM HKTLTSQQDL AAGRMVSLYA 60 DPSIGHKMTA RQRWTPTPLQ LQILERLFDQ DTGTPSKQKI KDLTEELSQH GQIAEQNICN 120 WFQNRRARSK RKQHCGVGSS NNKNGEGEVE TETETMNEKR KRPESLFVVL PDGNNNNVIG 180 TTTTTSPTPE DLCFQSPKMS LDLHLLGVQS NPRDEHLVES YNLYDHVEDY DMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013624814.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189541	0.0	AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624814.1	1e-177	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-113	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D3BK55	1e-155	A0A0D3BK55_BRAOL; Uncharacterized protein
STRING	Bo3g155580.1	1e-156	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-107	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]