PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624999.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 250aa    MW: 28090.6 Da    PI: 9.1997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29102160159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W+KYGqK ++g++++rsYY+Ct+ gC+vkk+ver a++ k ++itY g+H+h 
  XP_013624999.1 102 LDDGYSWKKYGQKLIRGNPNARSYYKCTFVGCNVKKHVERRADNVKSLVITYYGNHEHA 160
                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-2991162IPR003657WRKY domain
SuperFamilySSF1182904.45E-2596162IPR003657WRKY domain
PROSITE profilePS5081129.49397162IPR003657WRKY domain
SMARTSM007744.1E-32102161IPR003657WRKY domain
PfamPF031061.6E-22103159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MFSNSSSQIV PPSSVTIIGP PEMVENYGGD HATMMISNNG LPHQRMDADQ APEDPNIGYV  60
LNVEPSSPKR REDDVSNMIG AIRTGRYNEG VKIQMESEEN NLDDGYSWKK YGQKLIRGNP  120
NARSYYKCTF VGCNVKKHVE RRADNVKSLV ITYYGNHEHA APVHRRKCYL LKKRPGSSMS  180
QDASNKTPRL GRPPSSSSAF QVFSPSFEPH LDMTQINMTG LSKLPSLPAN QNDEPKIDRA  240
YPMVHRYTWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2393163878Probable WRKY transcription factor 4
2lex_A2e-2393163878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624999.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A0D3BN190.0A0A0D3BN19_BRAOL; Uncharacterized protein
STRINGBo3g184540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-38WRKY DNA-binding protein 10