PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013625044.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 307aa MW: 35527 Da PI: 5.9585

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013625044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd+ v XP_013625044.1 6 LPPGFRFHPTDEELVAYYLDRKVNGRTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRVVE 99 79**************************.99**********95334455788******************************999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl XP_013625044.1 100 S-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-63	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	59.531	6	154	IPR003441	NAC domain
Pfam	PF02365	4.9E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RTIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRVVES KKMKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTYPTSSP SIQESYALCR VFKKNIQIPK RKGEEMSTSV GKEEEEEKKK 180 WKKYDGERME RESEEVESLK IASAETSSSE LTQGILLDEA NSSSIFALHF SSSFLDDHDT 240 FCENYPQLPS HPPLQLQDFP QLSMNEAEII SMDNSKQQDF HYRDSVKGTL DEIFSFASSS 300 ATLPPSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	1	155	15	169	NAC domain-containing protein 19
3swm_B	4e-56	1	155	15	169	NAC domain-containing protein 19
3swm_C	4e-56	1	155	15	169	NAC domain-containing protein 19
3swm_D	4e-56	1	155	15	169	NAC domain-containing protein 19
3swp_A	4e-56	1	155	15	169	NAC domain-containing protein 19
3swp_B	4e-56	1	155	15	169	NAC domain-containing protein 19
3swp_C	4e-56	1	155	15	169	NAC domain-containing protein 19
3swp_D	4e-56	1	155	15	169	NAC domain-containing protein 19
4dul_A	3e-56	1	155	12	166	NAC domain-containing protein 19
4dul_B	3e-56	1	155	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013625044.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	1e-167	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625044.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	5e-82	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A078FBZ0	0.0	A0A078FBZ0_BRANA; BnaC03g71120D protein
TrEMBL	A0A0D3BNF2	0.0	A0A0D3BNF2_BRAOL; Uncharacterized protein
STRING	Bo3g185870.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-140	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]