PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625135.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 233aa    MW: 25855.4 Da    PI: 5.0361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1774123254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  XP_013625135.1  74 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAYATK 123
                     69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-2873133No hitNo description
SMARTSM003801.2E-3474138IPR001471AP2/ERF domain
PROSITE profilePS5103221.86574132IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2174134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-2974133IPR001471AP2/ERF domain
PfamPF008472.5E-1174121IPR001471AP2/ERF domain
PRINTSPR003673.8E-107586IPR001471AP2/ERF domain
PRINTSPR003673.8E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MYSSSSSWSS SQESFLWNES SFLDQSFFCP AHNYSDDFFS FESPEMMIKE ETQNDDVSNS  60
EGEEKIGTVD EEKSYRGVRK RPWGKFAAEI RDSTRNGIRV WLGTFDKAEE AALAYDQAAY  120
ATKGSLAVLN FPVEVVKESL KKMESVNLED GGSPVMALKR KHSLRNRPRG KKRSSNSSSA  180
SSCNSCSYSS SSSSSSSSSR SNKQSVVKQE SGTLVVFEDL GAEYLEQLLM SSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2767134774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.153010.0leaf
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625135.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625135.11e-169PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-121ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078GEX81e-168A0A078GEX8_BRANA; BnaC03g17400D protein
TrEMBLA0A0D3B4D21e-168A0A0D3B4D2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AMV51e-168A0A3P6AMV5_BRAOL; Uncharacterized protein
STRINGBo3g025110.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-106ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]